Analysis of interatomic Contacts of Structural Units in PDB entry:
6MYQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MYQ entry

There are 5 chains in PDB entry 6MYQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 11TYR 621
B
 SER 9GLU 247
C
 ALA 2GLU 14
C
 ASN 16MET 140
D
 SER 2ILE 103
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6MYQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 40Right-handed alpha
Helix 2
AA2
A
51 60Right-handed 310
Helix 3
AA3
A
75 87Right-handed alpha
Helix 4
AA4
A
92 114Right-handed alpha
Helix 5
AA5
A
152 166Right-handed alpha
Helix 6
AA6
A
216 220Right-handed 310
Helix 7
AA7
A
231 240Right-handed alpha
Helix 8
AA8
A
266 271Right-handed alpha
Helix 9
AA9
A
283 288Right-handed alpha
Helix 10
AB1
A
291 295Right-handed 310
Helix 11
AB2
A
296 310Right-handed alpha
Helix 12
AB3
A
329 337Right-handed alpha
Helix 13
AB4
A
337 349Right-handed alpha
Helix 14
AB5
A
412 432Right-handed alpha
Helix 15
AB6
A
446 458Right-handed alpha
Helix 16
AB7
A
465 480Right-handed alpha
Helix 17
AB8
A
485 503Right-handed alpha
Helix 18
AB9
A
516 542Right-handed alpha
Helix 19
AC1
A
574 578Right-handed 310
Helix 20
AC2
B
38 40Right-handed 310
Helix 21
AC3
B
43 55Right-handed alpha
Helix 22
AC4
B
115 125Right-handed alpha
Helix 23
AC5
B
145 151Right-handed alpha
Helix 24
AC6
B
164 167Right-handed 310
Helix 25
AC7
B
168 175Right-handed alpha
Helix 26
AC8
B
179 192Right-handed alpha
Helix 27
AC9
B
198 205Right-handed alpha
Helix 28
AD1
B
219 225Right-handed alpha
Helix 29
AD2
B
230 245Right-handed alpha
Helix 30
AD3
C
4 18Right-handed alpha
Helix 31
AD4
C
33 63Right-handed alpha
Helix 32
AD5
C
66 77Right-handed alpha
Helix 33
AD6
C
80 110Right-handed alpha
Helix 34
AD7
C
115 140Right-handed alpha
Helix 35
AD8
D
4 30Right-handed alpha
Helix 36
AD9
D
32 59Right-handed alpha
Helix 37
AE1
D
61 90Right-handed alpha
Helix 38
AE2
D
91 102Right-handed alpha
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There are 10 sheets in PDB entry 6MYQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 174first strand
Strand 2
A
44 48parallel
Strand 3
A
14 24parallel
Strand 4
A
200 211parallel
Strand 5
A
187 195anti-parallel
Strand 6
A
176 184anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 174first strand
Strand 2
A
44 48parallel
Strand 3
A
14 24parallel
Strand 4
A
200 211parallel
Strand 5
A
385 394parallel
Strand 6
A
377 382anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
146 147anti-parallel
Strand 3
A
127 128anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
581 588anti-parallel
Strand 3
A
593 600anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 257first strand
Strand 2
A
357 366anti-parallel
Strand 3
A
321 324anti-parallel
Strand 4
A
274 276anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
A
399 400parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 464first strand
Strand 2
A
506 507parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
483 484first strand
Strand 2
A
550 551parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 36first strand
Strand 2
B
11 18anti-parallel
Strand 3
B
97 100parallel
Strand 4
B
74 77anti-parallel
Strand 5
B
80 83anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 109first strand
Strand 2
B
112 113anti-parallel
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