Analysis of interatomic Contacts of Structural Units in PDB entry:
6MYW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MYW entry

There are 4 chains in PDB entry 6MYW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 356
B	MET 1	ALA 356
C	MET 1	ALA 356
D	MET 1	SER 226

There are 52 helices in PDB entry 6MYW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	46	Right-handed alpha
Helix 2	AA2	A	74	91	Right-handed alpha
Helix 3	AA3	A	102	106	Right-handed 310
Helix 4	AA4	A	107	112	Right-handed alpha
Helix 5	AA5	A	143	164	Right-handed alpha
Helix 6	AA6	A	177	184	Right-handed alpha
Helix 7	AA7	A	197	217	Right-handed alpha
Helix 8	AA8	A	239	254	Right-handed alpha
Helix 9	AA9	A	277	285	Right-handed alpha
Helix 10	AB1	A	296	306	Right-handed alpha
Helix 11	AB2	A	315	321	Right-handed alpha
Helix 12	AB3	A	323	331	Right-handed alpha
Helix 13	AB4	A	338	342	Right-handed 310
Helix 14	AB5	B	36	46	Right-handed alpha
Helix 15	AB6	B	74	91	Right-handed alpha
Helix 16	AB7	B	102	106	Right-handed 310
Helix 17	AB8	B	107	112	Right-handed alpha
Helix 18	AB9	B	143	164	Right-handed alpha
Helix 19	AC1	B	177	184	Right-handed alpha
Helix 20	AC2	B	197	217	Right-handed alpha
Helix 21	AC3	B	239	254	Right-handed alpha
Helix 22	AC4	B	277	285	Right-handed alpha
Helix 23	AC5	B	296	306	Right-handed alpha
Helix 24	AC6	B	315	321	Right-handed alpha
Helix 25	AC7	B	323	331	Right-handed alpha
Helix 26	AC8	B	338	342	Right-handed 310
Helix 27	AC9	C	36	46	Right-handed alpha
Helix 28	AD1	C	74	91	Right-handed alpha
Helix 29	AD2	C	102	106	Right-handed 310
Helix 30	AD3	C	107	112	Right-handed alpha
Helix 31	AD4	C	143	165	Right-handed alpha
Helix 32	AD5	C	177	184	Right-handed alpha
Helix 33	AD6	C	197	217	Right-handed alpha
Helix 34	AD7	C	239	254	Right-handed alpha
Helix 35	AD8	C	277	282	Right-handed alpha
Helix 36	AD9	C	296	306	Right-handed alpha
Helix 37	AE1	C	315	321	Right-handed alpha
Helix 38	AE2	C	323	331	Right-handed alpha
Helix 39	AE3	C	338	342	Right-handed 310
Helix 40	AE4	D	36	46	Right-handed alpha
Helix 41	AE5	D	74	91	Right-handed alpha
Helix 42	AE6	D	102	106	Right-handed 310
Helix 43	AE7	D	107	112	Right-handed alpha
Helix 44	AE8	D	143	164	Right-handed alpha
Helix 45	AE9	D	177	184	Right-handed alpha
Helix 46	AF1	D	197	217	Right-handed alpha
Helix 47	AF2	D	239	254	Right-handed alpha
Helix 48	AF3	D	277	283	Right-handed alpha
Helix 49	AF4	D	296	306	Right-handed alpha
Helix 50	AF5	D	315	321	Right-handed alpha
Helix 51	AF6	D	323	331	Right-handed alpha
Helix 52	AF7	D	338	342	Right-handed 310

There are 16 sheets in PDB entry 6MYW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	10	first strand
Strand 2	A	13	15	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	A	51	58	parallel
Strand 3	A	95	100	parallel
Strand 4	A	168	172	parallel
Strand 5	A	221	225	parallel
Strand 6	A	257	261	parallel
Strand 7	A	289	292	parallel
Strand 8	A	311	314	parallel
Strand 9	A	19	21	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	140	141	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	134	135	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	B	13	15	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	58	first strand
Strand 2	B	95	100	parallel
Strand 3	B	168	172	parallel
Strand 4	B	221	225	parallel
Strand 5	B	257	261	parallel
Strand 6	B	289	292	parallel
Strand 7	B	311	314	parallel
Strand 8	B	19	21	parallel
Strand 9	B	51	53	parallel
Strand 10	B	95	100	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	140	141	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	127	first strand
Strand 2	B	134	135	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	10	first strand
Strand 2	C	13	15	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	21	first strand
Strand 2	C	51	58	parallel
Strand 3	C	95	100	parallel
Strand 4	C	168	172	parallel
Strand 5	C	221	225	parallel
Strand 6	C	257	261	parallel
Strand 7	C	289	292	parallel
Strand 8	C	311	314	parallel
Strand 9	C	19	21	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	117	first strand
Strand 2	C	140	141	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	127	first strand
Strand 2	C	134	135	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	10	first strand
Strand 2	D	13	15	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	21	first strand
Strand 2	D	51	58	parallel
Strand 3	D	95	100	parallel
Strand 4	D	168	172	parallel
Strand 5	D	221	225	parallel
Strand 6	D	257	261	parallel
Strand 7	D	289	292	parallel
Strand 8	D	311	314	parallel
Strand 9	D	19	21	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	117	first strand
Strand 2	D	140	141	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	127	first strand
Strand 2	D	134	135	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MYW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MYW