Analysis of interatomic Contacts of Structural Units in PDB entry:
6N01

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6N01 entry

There are 4 chains in PDB entry 6N01 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 33	VAL 404
A	ASP 32	VAL 404
C	ASP 32	VAL 404
D	ASP 32	VAL 404

There are 8 helices in PDB entry 6N01. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	149	154	Right-handed alpha
Helix 2	AA2	B	367	369	Right-handed 310
Helix 3	AA3	A	149	154	Right-handed alpha
Helix 4	AA4	A	367	369	Right-handed 310
Helix 5	AA5	C	149	154	Right-handed alpha
Helix 6	AA6	C	367	369	Right-handed 310
Helix 7	AA7	D	149	154	Right-handed alpha
Helix 8	AA8	D	367	369	Right-handed 310

There are 36 sheets in PDB entry 6N01. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	47	52	anti-parallel
Strand 3	B	34	42	anti-parallel
Strand 4	B	392	401	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	72	first strand
Strand 2	B	78	83	anti-parallel
Strand 3	B	88	93	anti-parallel
Strand 4	B	113	120	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	B	108	109	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	130	first strand
Strand 2	B	133	138	anti-parallel
Strand 3	B	143	148	anti-parallel
Strand 4	B	160	163	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	174	first strand
Strand 2	B	178	183	anti-parallel
Strand 3	B	195	200	anti-parallel
Strand 4	B	210	211	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	221	first strand
Strand 2	B	224	228	anti-parallel
Strand 3	B	232	237	anti-parallel
Strand 4	B	244	249	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	264	first strand
Strand 2	B	271	274	anti-parallel
Strand 3	B	279	283	anti-parallel
Strand 4	B	291	295	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	305	first strand
Strand 2	B	312	317	anti-parallel
Strand 3	B	321	326	anti-parallel
Strand 4	B	331	337	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	358	first strand
Strand 2	B	361	366	anti-parallel
Strand 3	B	371	376	anti-parallel
Strand 4	B	381	387	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	63	first strand
Strand 2	A	47	52	anti-parallel
Strand 3	A	33	42	anti-parallel
Strand 4	A	392	402	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	72	first strand
Strand 2	A	78	83	anti-parallel
Strand 3	A	88	93	anti-parallel
Strand 4	A	113	120	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	A	108	109	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	130	first strand
Strand 2	A	133	138	anti-parallel
Strand 3	A	143	148	anti-parallel
Strand 4	A	160	163	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	175	first strand
Strand 2	A	178	183	anti-parallel
Strand 3	A	195	200	anti-parallel
Strand 4	A	210	211	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	221	first strand
Strand 2	A	224	228	anti-parallel
Strand 3	A	232	237	anti-parallel
Strand 4	A	244	249	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	264	first strand
Strand 2	A	271	274	anti-parallel
Strand 3	A	279	283	anti-parallel
Strand 4	A	291	295	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	305	first strand
Strand 2	A	312	317	anti-parallel
Strand 3	A	321	326	anti-parallel
Strand 4	A	332	337	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	358	first strand
Strand 2	A	361	366	anti-parallel
Strand 3	A	371	376	anti-parallel
Strand 4	A	381	387	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	63	first strand
Strand 2	C	47	52	anti-parallel
Strand 3	C	33	42	anti-parallel
Strand 4	C	392	402	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	72	first strand
Strand 2	C	78	83	anti-parallel
Strand 3	C	88	93	anti-parallel
Strand 4	C	113	120	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	108	109	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	130	first strand
Strand 2	C	133	138	anti-parallel
Strand 3	C	143	148	anti-parallel
Strand 4	C	160	163	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	174	first strand
Strand 2	C	179	182	anti-parallel
Strand 3	C	195	199	anti-parallel
Strand 4	C	205	211	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	221	first strand
Strand 2	C	224	228	anti-parallel
Strand 3	C	232	237	anti-parallel
Strand 4	C	244	249	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	264	first strand
Strand 2	C	271	274	anti-parallel
Strand 3	C	279	283	anti-parallel
Strand 4	C	291	295	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	305	first strand
Strand 2	C	312	317	anti-parallel
Strand 3	C	321	326	anti-parallel
Strand 4	C	332	337	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	355	358	first strand
Strand 2	C	361	366	anti-parallel
Strand 3	C	371	376	anti-parallel
Strand 4	C	381	387	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	63	first strand
Strand 2	D	47	52	anti-parallel
Strand 3	D	33	42	anti-parallel
Strand 4	D	392	402	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	72	first strand
Strand 2	D	78	83	anti-parallel
Strand 3	D	88	93	anti-parallel
Strand 4	D	113	120	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	97	first strand
Strand 2	D	108	109	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	130	first strand
Strand 2	D	133	138	anti-parallel
Strand 3	D	143	148	anti-parallel
Strand 4	D	160	163	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	174	first strand
Strand 2	D	178	183	anti-parallel
Strand 3	D	195	200	anti-parallel
Strand 4	D	210	211	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	221	first strand
Strand 2	D	224	228	anti-parallel
Strand 3	D	232	237	anti-parallel
Strand 4	D	244	249	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	264	first strand
Strand 2	D	271	274	anti-parallel
Strand 3	D	279	283	anti-parallel
Strand 4	D	291	295	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	300	305	first strand
Strand 2	D	312	317	anti-parallel
Strand 3	D	321	326	anti-parallel
Strand 4	D	331	337	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	355	358	first strand
Strand 2	D	361	366	anti-parallel
Strand 3	D	371	376	anti-parallel
Strand 4	D	382	387	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6N01

Analysis of interatomic Contacts of Structural Units in PDB entry:
6N01