Analysis of interatomic Contacts of Structural Units in PDB entry:
6N04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6N04 entry

There are 2 chains in PDB entry 6N04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 9SER 387
B
 ARG 8SER 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6N04. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 31Right-handed alpha
Helix 2
AA2
A
59 67Right-handed alpha
Helix 3
AA3
A
69 74Right-handed alpha
Helix 4
AA4
A
111 121Right-handed alpha
Helix 5
AA5
A
122 125Right-handed 310
Helix 6
AA6
A
168 173Right-handed 310
Helix 7
AA7
A
191 196Right-handed alpha
Helix 8
AA8
A
196 204Right-handed alpha
Helix 9
AA9
A
238 244Right-handed alpha
Helix 10
AB1
A
245 248Right-handed 310
Helix 11
AB2
A
249 261Right-handed alpha
Helix 12
AB3
A
265 275Right-handed alpha
Helix 13
AB4
A
303 309Right-handed alpha
Helix 14
AB5
A
311 314Right-handed 310
Helix 15
AB6
A
315 334Right-handed alpha
Helix 16
AB7
A
337 368Right-handed alpha
Helix 17
AB8
A
371 386Right-handed alpha
Helix 18
AB9
B
18 31Right-handed alpha
Helix 19
AC1
B
59 67Right-handed alpha
Helix 20
AC2
B
69 74Right-handed alpha
Helix 21
AC3
B
111 121Right-handed alpha
Helix 22
AC4
B
122 125Right-handed 310
Helix 23
AC5
B
168 173Right-handed 310
Helix 24
AC6
B
191 196Right-handed alpha
Helix 25
AC7
B
196 204Right-handed alpha
Helix 26
AC8
B
238 244Right-handed alpha
Helix 27
AC9
B
245 248Right-handed 310
Helix 28
AD1
B
249 261Right-handed alpha
Helix 29
AD2
B
265 274Right-handed alpha
Helix 30
AD3
B
303 309Right-handed alpha
Helix 31
AD4
B
311 314Right-handed 310
Helix 32
AD5
B
315 334Right-handed alpha
Helix 33
AD6
B
337 368Right-handed alpha
Helix 34
AD7
B
371 385Right-handed alpha
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There are 8 sheets in PDB entry 6N04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
36 39parallel
Strand 3
A
12 15parallel
Strand 4
A
158 161parallel
Strand 5
A
300 302parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
108 110anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 97first strand
Strand 2
A
84 87anti-parallel
Strand 3
A
207 211parallel
Strand 4
A
215 221anti-parallel
Strand 5
A
227 233anti-parallel
Strand 6
A
179 189anti-parallel
Strand 7
A
280 287anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 138first strand
Strand 2
A
144 148anti-parallel
Strand 3
A
153 156anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 129first strand
Strand 2
B
36 39parallel
Strand 3
B
12 15parallel
Strand 4
B
158 161parallel
Strand 5
B
300 302parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 54first strand
Strand 2
B
108 110anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 97first strand
Strand 2
B
84 87anti-parallel
Strand 3
B
207 211parallel
Strand 4
B
215 221anti-parallel
Strand 5
B
227 233anti-parallel
Strand 6
B
179 189anti-parallel
Strand 7
B
281 287anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 138first strand
Strand 2
B
144 148anti-parallel
Strand 3
B
153 156anti-parallel
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