Analysis of interatomic Contacts of Structural Units in PDB entry:
6N0I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6N0I entry

There are 2 chains in PDB entry 6N0I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 702
B	ALA 0	ARG 635

There are 45 helices in PDB entry 6N0I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	8	Right-handed 310
Helix 2	AA2	A	22	36	Right-handed alpha
Helix 3	AA3	A	96	107	Right-handed alpha
Helix 4	AA4	A	121	134	Right-handed alpha
Helix 5	AA5	A	151	162	Right-handed alpha
Helix 6	AA6	A	176	180	Right-handed 310
Helix 7	AA7	A	196	199	Right-handed 310
Helix 8	AA8	A	209	229	Right-handed alpha
Helix 9	AA9	A	231	240	Right-handed alpha
Helix 10	AB1	A	245	259	Right-handed alpha
Helix 11	AB2	A	275	287	Right-handed alpha
Helix 12	AB3	A	425	443	Right-handed alpha
Helix 13	AB4	A	463	477	Right-handed alpha
Helix 14	AB5	A	544	546	Right-handed 310
Helix 15	AB6	A	547	562	Right-handed alpha
Helix 16	AB7	A	587	601	Right-handed alpha
Helix 17	AB8	A	601	606	Right-handed alpha
Helix 18	AB9	A	622	624	Right-handed 310
Helix 19	AC1	A	625	636	Right-handed alpha
Helix 20	AC2	A	659	661	Right-handed 310
Helix 21	AC3	A	663	673	Right-handed alpha
Helix 22	AC4	A	689	698	Right-handed alpha
Helix 23	AC5	B	6	8	Right-handed 310
Helix 24	AC6	B	22	37	Right-handed alpha
Helix 25	AC7	B	97	107	Right-handed alpha
Helix 26	AC8	B	121	134	Right-handed alpha
Helix 27	AC9	B	151	162	Right-handed alpha
Helix 28	AD1	B	176	180	Right-handed 310
Helix 29	AD2	B	196	199	Right-handed 310
Helix 30	AD3	B	209	229	Right-handed alpha
Helix 31	AD4	B	231	240	Right-handed alpha
Helix 32	AD5	B	245	259	Right-handed alpha
Helix 33	AD6	B	275	287	Right-handed alpha
Helix 34	AD7	B	425	427	Right-handed 310
Helix 35	AD8	B	428	443	Right-handed alpha
Helix 36	AD9	B	463	477	Right-handed alpha
Helix 37	AE1	B	544	546	Right-handed 310
Helix 38	AE2	B	547	562	Right-handed alpha
Helix 39	AE3	B	587	601	Right-handed alpha
Helix 40	AE4	B	602	604	Right-handed 310
Helix 41	AE5	B	622	624	Right-handed 310
Helix 42	AE6	B	625	636	Right-handed alpha
Helix 43	AE7	B	659	661	Right-handed 310
Helix 44	AE8	B	663	673	Right-handed alpha
Helix 45	AE9	B	689	701	Right-handed alpha

There are 20 sheets in PDB entry 6N0I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	72	first strand
Strand 2	A	83	88	anti-parallel
Strand 3	A	10	17	parallel
Strand 4	A	109	115	parallel
Strand 5	A	138	143	parallel
Strand 6	A	263	267	parallel
Strand 7	A	167	169	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	174	first strand
Strand 2	A	182	185	anti-parallel
Strand 3	A	191	194	anti-parallel
Strand 4	A	203	206	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	300	first strand
Strand 2	A	303	310	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	360	first strand
Strand 2	A	349	352	anti-parallel
Strand 3	A	397	399	anti-parallel
Strand 4	A	319	328	anti-parallel
Strand 5	A	332	341	anti-parallel
Strand 6	A	383	387	anti-parallel
Strand 7	A	364	367	anti-parallel
Strand 8	A	372	375	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	345	first strand
Strand 2	A	377	379	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	450	first strand
Strand 2	A	457	461	anti-parallel
Strand 3	A	417	423	anti-parallel
Strand 4	A	482	484	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	450	first strand
Strand 2	A	457	461	anti-parallel
Strand 3	A	417	423	anti-parallel
Strand 4	A	488	489	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	494	first strand
Strand 2	A	609	621	anti-parallel
Strand 3	A	649	657	anti-parallel
Strand 4	A	644	646	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	639	640	first strand
Strand 2	A	649	657	anti-parallel
Strand 3	A	609	621	anti-parallel
Strand 4	A	677	687	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	507	first strand
Strand 2	A	514	523	anti-parallel
Strand 3	A	571	579	anti-parallel
Strand 4	A	531	536	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	72	first strand
Strand 2	B	83	88	anti-parallel
Strand 3	B	10	17	parallel
Strand 4	B	109	115	parallel
Strand 5	B	138	143	parallel
Strand 6	B	263	267	parallel
Strand 7	B	167	169	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	174	first strand
Strand 2	B	182	185	anti-parallel
Strand 3	B	191	194	anti-parallel
Strand 4	B	203	206	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	300	first strand
Strand 2	B	303	310	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	360	first strand
Strand 2	B	349	352	anti-parallel
Strand 3	B	397	399	anti-parallel
Strand 4	B	319	326	anti-parallel
Strand 5	B	334	341	anti-parallel
Strand 6	B	383	387	anti-parallel
Strand 7	B	364	367	anti-parallel
Strand 8	B	372	375	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	345	first strand
Strand 2	B	377	379	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	450	first strand
Strand 2	B	457	461	anti-parallel
Strand 3	B	417	423	anti-parallel
Strand 4	B	482	484	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	450	first strand
Strand 2	B	457	461	anti-parallel
Strand 3	B	417	423	anti-parallel
Strand 4	B	488	489	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	492	494	first strand
Strand 2	B	609	621	anti-parallel
Strand 3	B	649	657	anti-parallel
Strand 4	B	644	646	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	639	640	first strand
Strand 2	B	649	657	anti-parallel
Strand 3	B	609	621	anti-parallel
Strand 4	B	677	687	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	499	508	first strand
Strand 2	B	513	523	anti-parallel
Strand 3	B	571	579	anti-parallel
Strand 4	B	531	536	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6N0I

Analysis of interatomic Contacts of Structural Units in PDB entry:
6N0I