Analysis of interatomic Contacts of Structural Units in PDB entry:
6N0T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6N0T entry

There is 1 chain in PDB entry 6N0T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 14LEU 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6N0T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 28Right-handed 310
Helix 2
AA2
A
37 53Right-handed alpha
Helix 3
AA3
A
87 91Right-handed 310
Helix 4
AA4
A
131 138Right-handed alpha
Helix 5
AA5
A
181 198Right-handed alpha
Helix 6
AA6
A
200 211Right-handed alpha
Helix 7
AA7
A
254 266Right-handed alpha
Helix 8
AA8
A
277 292Right-handed alpha
Helix 9
AA9
A
329 345Right-handed alpha
Helix 10
AB1
A
354 372Right-handed alpha
Helix 11
AB2
A
374 381Right-handed alpha
Helix 12
AB3
A
384 396Right-handed alpha
Helix 13
AB4
A
399 406Right-handed alpha
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There are 4 sheets in PDB entry 6N0T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 69first strand
Strand 2
A
78 84anti-parallel
Strand 3
A
101 105anti-parallel
Strand 4
A
111 116anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 275first strand
Strand 2
A
139 147anti-parallel
Strand 3
A
301 308anti-parallel
Strand 4
A
318 325anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 167first strand
Strand 2
A
152 158anti-parallel
Strand 3
A
213 220anti-parallel
Strand 4
A
237 245anti-parallel
Strand 5
A
268 269parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 294first strand
Strand 2
A
297 298anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il