Analysis of interatomic Contacts of Structural Units in PDB entry:
6N12


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6N12 entry

There are 2 chains in PDB entry 6N12 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 47VAL 317
B
 GLY 48ALA 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 6N12. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 71Right-handed alpha
Helix 2
AA2
A
127 146Right-handed alpha
Helix 3
AA3
A
173 184Right-handed alpha
Helix 4
AA4
A
195 199Right-handed 310
Helix 5
AA5
A
200 218Right-handed alpha
Helix 6
AA6
A
281 291Right-handed alpha
Helix 7
AA7
A
293 304Right-handed alpha
Helix 8
AA8
A
304 316Right-handed alpha
Helix 9
AA9
B
62 72Right-handed alpha
Helix 10
AB1
B
127 147Right-handed alpha
Helix 11
AB2
B
173 184Right-handed alpha
Helix 12
AB3
B
195 199Right-handed 310
Helix 13
AB4
B
200 218Right-handed alpha
Helix 14
AB5
B
239 244Right-handed 310
Helix 15
AB6
B
281 289Right-handed alpha
Helix 16
AB7
B
290 304Right-handed alpha
Helix 17
AB8
B
304 316Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6N12. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 102first strand
Strand 2
A
105 113anti-parallel
Strand 3
A
49 56parallel
Strand 4
A
160 165parallel
Strand 5
A
189 193parallel
Strand 6
A
246 247parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 257first strand
Strand 2
A
260 267anti-parallel
Strand 3
A
270 273anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 100first strand
Strand 2
B
107 113anti-parallel
Strand 3
B
49 56parallel
Strand 4
B
160 165parallel
Strand 5
B
189 193parallel
Strand 6
B
246 247parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 257first strand
Strand 2
B
260 267anti-parallel
Strand 3
B
270 273anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il