Analysis of interatomic Contacts of Structural Units in PDB entry:
6N13


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6N13 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 6N13 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASN 144VAL 465
D
 MET 701GLY 776
C
 MET 501ASP 654
A
 MET 1GLU 64
A
 THR 66GLY 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6N13. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
182 188Right-handed alpha
Helix 2
AA2
B
261 275Right-handed alpha
Helix 3
AA3
B
300 307Right-handed 310
Helix 4
AA4
B
308 328Right-handed alpha
Helix 5
AA5
B
394 401Right-handed alpha
Helix 6
AA6
B
454 461Right-handed alpha
Helix 7
AA7
D
722 734Right-handed alpha
Helix 8
AA8
D
737 739Right-handed 310
Helix 9
AA9
D
755 760Right-handed alpha
Helix 10
AB1
C
502 518Right-handed alpha
Helix 11
AB2
C
600 614Right-handed alpha
Helix 12
AB3
C
622 632Right-handed alpha
Helix 13
AB4
C
632 648Right-handed alpha
Helix 14
AB5
A
22 34Right-handed alpha
Helix 15
AB6
A
55 60Right-handed alpha
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There are 10 sheets in PDB entry 6N13. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 212first strand
Strand 2
B
157 166anti-parallel
Strand 3
B
147 149anti-parallel
Strand 4
B
224 226anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 176first strand
Strand 2
B
194 196anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 250first strand
Strand 2
B
258 260anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 279first strand
Strand 2
B
285 286anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 351first strand
Strand 2
B
363 364anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
415 417first strand
Strand 2
B
424 426anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
433 435first strand
Strand 2
B
444 446anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
713 716first strand
Strand 2
D
702 706anti-parallel
Strand 3
D
766 771parallel
Strand 4
D
741 744anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
522 527first strand
Strand 2
C
534 539anti-parallel
Strand 3
C
551 556anti-parallel
Strand 4
C
567 570anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
66 71parallel
Strand 4
A
41 45anti-parallel
Strand 5
A
48 49anti-parallel
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