Analysis of interatomic Contacts of Structural Units in PDB entry:
6N1S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6N1S entry

There are 2 chains in PDB entry 6N1S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3VAL 610
B
 PRO 4VAL 610
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6N1S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 41Right-handed alpha
Helix 2
AA2
A
81 87Right-handed alpha
Helix 3
AA3
A
88 92Right-handed 310
Helix 4
AA4
A
107 115Right-handed alpha
Helix 5
AA5
A
129 142Right-handed alpha
Helix 6
AA6
A
153 164Right-handed alpha
Helix 7
AA7
A
189 193Right-handed 310
Helix 8
AA8
A
286 298Right-handed alpha
Helix 9
AA9
A
324 338Right-handed alpha
Helix 10
AB1
A
374 387Right-handed alpha
Helix 11
AB2
A
392 397Right-handed alpha
Helix 12
AB3
A
403 407Right-handed 310
Helix 13
AB4
A
408 415Right-handed alpha
Helix 14
AB5
A
428 436Right-handed alpha
Helix 15
AB6
A
453 465Right-handed alpha
Helix 16
AB7
A
480 484Right-handed 310
Helix 17
AB8
A
516 536Right-handed alpha
Helix 18
AB9
A
556 564Right-handed alpha
Helix 19
AC1
A
584 588Right-handed 310
Helix 20
AC2
B
28 41Right-handed alpha
Helix 21
AC3
B
81 87Right-handed alpha
Helix 22
AC4
B
88 92Right-handed 310
Helix 23
AC5
B
107 115Right-handed alpha
Helix 24
AC6
B
129 141Right-handed alpha
Helix 25
AC7
B
153 164Right-handed alpha
Helix 26
AC8
B
189 193Right-handed 310
Helix 27
AC9
B
286 298Right-handed alpha
Helix 28
AD1
B
324 338Right-handed alpha
Helix 29
AD2
B
374 387Right-handed alpha
Helix 30
AD3
B
392 397Right-handed alpha
Helix 31
AD4
B
403 407Right-handed 310
Helix 32
AD5
B
408 415Right-handed alpha
Helix 33
AD6
B
428 436Right-handed alpha
Helix 34
AD7
B
453 465Right-handed alpha
Helix 35
AD8
B
480 484Right-handed 310
Helix 36
AD9
B
516 536Right-handed alpha
Helix 37
AE1
B
556 564Right-handed alpha
Helix 38
AE2
B
584 588Right-handed 310
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There are 10 sheets in PDB entry 6N1S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
97 102parallel
Strand 3
A
75 80parallel
Strand 4
A
148 150parallel
Strand 5
A
5 11parallel
Strand 6
A
166 174parallel
Strand 7
A
241 251anti-parallel
Strand 8
A
236 238anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
97 102parallel
Strand 3
A
75 80parallel
Strand 4
A
148 150parallel
Strand 5
A
5 11parallel
Strand 6
A
166 174parallel
Strand 7
A
241 251anti-parallel
Strand 8
A
226 232anti-parallel
Strand 9
A
319 320parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
182 183anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 341first strand
Strand 2
A
349 360anti-parallel
Strand 3
A
539 553anti-parallel
Strand 4
A
502 513parallel
Strand 5
A
490 497anti-parallel
Strand 6
A
472 474anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 576first strand
Strand 2
A
593 596anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 127first strand
Strand 2
B
98 102parallel
Strand 3
B
76 80parallel
Strand 4
B
148 150parallel
Strand 5
B
5 11parallel
Strand 6
B
166 174parallel
Strand 7
B
241 251anti-parallel
Strand 8
B
236 238anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 127first strand
Strand 2
B
98 102parallel
Strand 3
B
76 80parallel
Strand 4
B
148 150parallel
Strand 5
B
5 11parallel
Strand 6
B
166 174parallel
Strand 7
B
241 251anti-parallel
Strand 8
B
226 232anti-parallel
Strand 9
B
319 320parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
182 183anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 341first strand
Strand 2
B
349 360anti-parallel
Strand 3
B
539 553anti-parallel
Strand 4
B
502 513parallel
Strand 5
B
490 497anti-parallel
Strand 6
B
472 474anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
573 576first strand
Strand 2
B
593 596anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il