Analysis of interatomic Contacts of Structural Units in PDB entry:
6N29

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6N29 entry

There are 2 chains in PDB entry 6N29 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 764	GLY 1241
B	LEU 765	GLU 1239

There are 26 helices in PDB entry 6N29. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	785	789	Right-handed 310
Helix 2	AA2	A	825	827	Right-handed 310
Helix 3	AA3	A	986	989	Right-handed 310
Helix 4	AA4	A	1002	1006	Right-handed 310
Helix 5	AA5	A	1017	1024	Right-handed alpha
Helix 6	AA6	A	1043	1047	Right-handed 310
Helix 7	AA7	A	1049	1061	Right-handed alpha
Helix 8	AA8	A	1062	1064	Right-handed 310
Helix 9	AA9	A	1065	1075	Right-handed alpha
Helix 10	AB1	A	1077	1089	Right-handed alpha
Helix 11	AB2	A	1097	1114	Right-handed alpha
Helix 12	AB3	A	1135	1139	Right-handed 310
Helix 13	AB4	A	1192	1196	Right-handed 310
Helix 14	AB5	B	785	789	Right-handed 310
Helix 15	AB6	B	825	827	Right-handed 310
Helix 16	AB7	B	986	989	Right-handed 310
Helix 17	AB8	B	1002	1006	Right-handed 310
Helix 18	AB9	B	1017	1024	Right-handed alpha
Helix 19	AC1	B	1043	1047	Right-handed 310
Helix 20	AC2	B	1049	1061	Right-handed alpha
Helix 21	AC3	B	1062	1065	Right-handed 310
Helix 22	AC4	B	1068	1075	Right-handed alpha
Helix 23	AC5	B	1077	1089	Right-handed alpha
Helix 24	AC6	B	1097	1114	Right-handed alpha
Helix 25	AC7	B	1135	1139	Right-handed 310
Helix 26	AC8	B	1192	1196	Right-handed 310

There are 20 sheets in PDB entry 6N29. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	772	774	first strand
Strand 2	A	807	809	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	814	816	first strand
Strand 2	A	821	823	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	829	831	first strand
Strand 2	A	834	836	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	841	844	first strand
Strand 2	A	847	852	anti-parallel
Strand 3	A	855	858	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	882	884	first strand
Strand 2	A	874	876	anti-parallel
Strand 3	A	865	870	anti-parallel
Strand 4	A	980	984	anti-parallel
Strand 5	A	970	974	anti-parallel
Strand 6	A	961	966	anti-parallel
Strand 7	A	953	958	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	890	895	first strand
Strand 2	A	905	912	anti-parallel
Strand 3	A	922	929	anti-parallel
Strand 4	A	932	937	anti-parallel
Strand 5	A	940	945	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1143	1151	first strand
Strand 2	A	1169	1176	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1182	1184	first strand
Strand 2	A	1189	1191	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1198	1201	first strand
Strand 2	A	1204	1207	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1211	1214	first strand
Strand 2	A	1223	1227	anti-parallel
Strand 3	A	1232	1236	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	772	774	first strand
Strand 2	B	807	809	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	814	817	first strand
Strand 2	B	820	823	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	829	831	first strand
Strand 2	B	834	836	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	841	844	first strand
Strand 2	B	847	851	anti-parallel
Strand 3	B	856	858	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	882	884	first strand
Strand 2	B	874	876	anti-parallel
Strand 3	B	865	870	anti-parallel
Strand 4	B	980	984	anti-parallel
Strand 5	B	970	974	anti-parallel
Strand 6	B	961	966	anti-parallel
Strand 7	B	953	958	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	890	895	first strand
Strand 2	B	905	912	anti-parallel
Strand 3	B	922	929	anti-parallel
Strand 4	B	932	937	anti-parallel
Strand 5	B	940	945	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1143	1151	first strand
Strand 2	B	1169	1176	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1182	1184	first strand
Strand 2	B	1189	1191	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1198	1201	first strand
Strand 2	B	1204	1207	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1211	1214	first strand
Strand 2	B	1223	1227	anti-parallel
Strand 3	B	1232	1236	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6N29

Analysis of interatomic Contacts of Structural Units in PDB entry:
6N29