Analysis of interatomic Contacts of Structural Units in PDB entry:
6N38

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6N38 entry

There are 11 chains in PDB entry 6N38 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	GLU 47	GLY 587
G	LEU 122	TRP 366
H	CYS 45	GLY 587
K	UNK 1	UNK 21
L	UNK 1	UNK 18
A	LYS 2	ALA 312
D	LYS 2	ALA 312
B	MET 1	SER 313
E	MET 1	SER 313
C	LYS 2	ALA 312
F	LYS 2	SER 313

There are103 helices in PDB entry 6N38. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	I	47	67	Right-handed alpha
Helix 2	AA2	I	68	77	Right-handed alpha
Helix 3	AA3	I	183	196	Right-handed alpha
Helix 4	AA4	I	237	248	Right-handed alpha
Helix 5	AA5	I	249	253	Right-handed 310
Helix 6	AA6	I	261	264	Right-handed 310
Helix 7	AA7	I	290	292	Right-handed 310
Helix 8	AA8	I	327	331	Right-handed 310
Helix 9	AA9	I	355	360	Right-handed alpha
Helix 10	AB1	I	364	369	Right-handed alpha
Helix 11	AB2	I	420	426	Right-handed alpha
Helix 12	AB3	I	459	469	Right-handed alpha
Helix 13	AB4	I	470	476	Right-handed 310
Helix 14	AB5	I	478	487	Right-handed alpha
Helix 15	AB6	I	488	490	Right-handed 310
Helix 16	AB7	I	494	502	Right-handed alpha
Helix 17	AB8	I	532	535	Right-handed 310
Helix 18	AB9	I	536	553	Right-handed alpha
Helix 19	AC1	I	554	556	Right-handed 310
Helix 20	AC2	G	123	140	Right-handed alpha
Helix 21	AC3	G	141	146	Right-handed 310
Helix 22	AC4	G	152	162	Right-handed alpha
Helix 23	AC5	G	169	173	Right-handed 310
Helix 24	AC6	G	176	187	Right-handed 310
Helix 25	AC7	G	193	205	Right-handed alpha
Helix 26	AC8	G	235	239	Right-handed 310
Helix 27	AC9	G	261	269	Right-handed alpha
Helix 28	AD1	G	272	286	Right-handed alpha
Helix 29	AD2	G	301	303	Right-handed 310
Helix 30	AD3	H	46	65	Right-handed alpha
Helix 31	AD4	H	67	80	Right-handed alpha
Helix 32	AD5	H	120	124	Right-handed 310
Helix 33	AD6	H	183	197	Right-handed alpha
Helix 34	AD7	H	237	249	Right-handed alpha
Helix 35	AD8	H	250	253	Right-handed 310
Helix 36	AD9	H	261	264	Right-handed 310
Helix 37	AE1	H	290	292	Right-handed 310
Helix 38	AE2	H	359	364	Right-handed alpha
Helix 39	AE3	H	420	425	Right-handed alpha
Helix 40	AE4	H	460	471	Right-handed alpha
Helix 41	AE5	H	478	488	Right-handed alpha
Helix 42	AE6	H	494	502	Right-handed alpha
Helix 43	AE7	H	532	535	Right-handed 310
Helix 44	AE8	H	536	554	Right-handed alpha
Helix 45	AE9	K	2	20	Right-handed alpha
Helix 46	AF1	L	2	18	Right-handed alpha
Helix 47	AF2	A	15	35	Right-handed alpha
Helix 48	AF3	A	51	56	Right-handed 310
Helix 49	AF4	A	89	92	Right-handed 310
Helix 50	AF5	A	190	193	Right-handed 310
Helix 51	AF6	A	194	219	Right-handed alpha
Helix 52	AF7	A	233	256	Right-handed alpha
Helix 53	AF8	A	260	276	Right-handed alpha
Helix 54	AF9	A	283	287	Right-handed 310
Helix 55	AG1	A	294	297	Right-handed 310
Helix 56	AG2	A	298	312	Right-handed alpha
Helix 57	AG3	D	15	35	Right-handed alpha
Helix 58	AG4	D	51	56	Right-handed 310
Helix 59	AG5	D	89	92	Right-handed 310
Helix 60	AG6	D	190	193	Right-handed 310
Helix 61	AG7	D	194	217	Right-handed alpha
Helix 62	AG8	D	233	256	Right-handed alpha
Helix 63	AG9	D	261	276	Right-handed alpha
Helix 64	AH1	D	294	297	Right-handed 310
Helix 65	AH2	D	298	312	Right-handed alpha
Helix 66	AH3	B	15	35	Right-handed alpha
Helix 67	AH4	B	51	56	Right-handed 310
Helix 68	AH5	B	89	92	Right-handed 310
Helix 69	AH6	B	190	193	Right-handed 310
Helix 70	AH7	B	194	218	Right-handed alpha
Helix 71	AH8	B	234	256	Right-handed alpha
Helix 72	AH9	B	260	276	Right-handed alpha
Helix 73	AI1	B	294	297	Right-handed 310
Helix 74	AI2	B	298	312	Right-handed alpha
Helix 75	AI3	E	15	35	Right-handed alpha
Helix 76	AI4	E	53	56	Right-handed 310
Helix 77	AI5	E	89	91	Right-handed 310
Helix 78	AI6	E	190	193	Right-handed 310
Helix 79	AI7	E	194	218	Right-handed alpha
Helix 80	AI8	E	233	256	Right-handed alpha
Helix 81	AI9	E	260	276	Right-handed alpha
Helix 82	AJ1	E	283	287	Right-handed 310
Helix 83	AJ2	E	294	297	Right-handed 310
Helix 84	AJ3	E	298	311	Right-handed alpha
Helix 85	AJ4	C	15	35	Right-handed alpha
Helix 86	AJ5	C	51	56	Right-handed 310
Helix 87	AJ6	C	89	92	Right-handed 310
Helix 88	AJ7	C	190	193	Right-handed 310
Helix 89	AJ8	C	194	218	Right-handed alpha
Helix 90	AJ9	C	233	256	Right-handed alpha
Helix 91	AK1	C	260	276	Right-handed alpha
Helix 92	AK2	C	283	287	Right-handed 310
Helix 93	AK3	C	294	297	Right-handed 310
Helix 94	AK4	C	298	312	Right-handed alpha
Helix 95	AK5	F	15	35	Right-handed alpha
Helix 96	AK6	F	51	56	Right-handed 310
Helix 97	AK7	F	89	92	Right-handed 310
Helix 98	AK8	F	190	193	Right-handed 310
Helix 99	AK9	F	194	219	Right-handed alpha
Helix 100	AL1	F	233	256	Right-handed alpha
Helix 101	AL2	F	260	276	Right-handed alpha
Helix 102	AL3	F	294	297	Right-handed 310
Helix 103	AL4	F	298	313	Right-handed alpha

There are 41 sheets in PDB entry 6N38. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	429	432	first strand
Strand 2	I	113	116	anti-parallel
Strand 3	I	127	130	anti-parallel
Strand 4	I	298	302	anti-parallel
Strand 5	I	90	96	anti-parallel
Strand 6	I	441	444	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	106	108	first strand
Strand 2	I	134	136	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	139	148	first strand
Strand 2	I	154	162	anti-parallel
Strand 3	I	271	279	anti-parallel
Strand 4	I	198	204	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	217	220	first strand
Strand 2	I	255	259	anti-parallel
Strand 3	I	175	180	anti-parallel
Strand 4	I	294	295	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	305	307	first strand
Strand 2	I	407	416	anti-parallel
Strand 3	I	311	313	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	305	307	first strand
Strand 2	I	407	416	anti-parallel
Strand 3	I	333	345	anti-parallel
Strand 4	I	348	351	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	321	323	first strand
Strand 2	I	386	391	anti-parallel
Strand 3	I	373	380	anti-parallel
Strand 4	I	353	354	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	504	516	first strand
Strand 2	I	519	530	anti-parallel
Strand 3	I	561	568	parallel
Strand 4	I	573	576	anti-parallel
Strand 5	G	360	361	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	209	221	first strand
Strand 2	G	245	258	anti-parallel
Strand 3	G	291	299	parallel
Strand 4	G	338	346	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	429	432	first strand
Strand 2	H	113	116	anti-parallel
Strand 3	H	127	130	anti-parallel
Strand 4	H	298	302	anti-parallel
Strand 5	H	90	97	anti-parallel
Strand 6	H	440	444	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	106	108	first strand
Strand 2	H	134	136	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	139	148	first strand
Strand 2	H	154	162	anti-parallel
Strand 3	H	274	279	anti-parallel
Strand 4	H	198	204	anti-parallel
Strand 5	H	213	214	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	217	220	first strand
Strand 2	H	255	259	anti-parallel
Strand 3	H	175	180	anti-parallel
Strand 4	H	294	295	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	305	306	first strand
Strand 2	H	407	416	anti-parallel
Strand 3	H	312	313	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	305	306	first strand
Strand 2	H	407	416	anti-parallel
Strand 3	H	333	345	anti-parallel
Strand 4	H	348	351	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	320	322	first strand
Strand 2	H	386	391	anti-parallel
Strand 3	H	373	380	anti-parallel
Strand 4	H	353	354	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	504	516	first strand
Strand 2	H	519	530	anti-parallel
Strand 3	H	561	568	parallel
Strand 4	H	574	577	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	49	first strand
Strand 2	A	61	67	anti-parallel
Strand 3	A	73	75	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	59	first strand
Strand 2	A	86	87	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	154	first strand
Strand 2	A	96	104	anti-parallel
Strand 3	A	162	172	anti-parallel
Strand 4	A	178	180	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	133	first strand
Strand 2	A	140	148	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	50	first strand
Strand 2	D	58	67	anti-parallel
Strand 3	D	73	75	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	50	first strand
Strand 2	D	58	67	anti-parallel
Strand 3	D	86	87	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	154	first strand
Strand 2	D	96	104	anti-parallel
Strand 3	D	162	172	anti-parallel
Strand 4	D	178	180	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	133	first strand
Strand 2	D	140	148	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	50	first strand
Strand 2	B	58	67	anti-parallel
Strand 3	B	73	75	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	50	first strand
Strand 2	B	58	67	anti-parallel
Strand 3	B	86	87	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	154	first strand
Strand 2	B	96	104	anti-parallel
Strand 3	B	162	172	anti-parallel
Strand 4	B	178	180	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	133	first strand
Strand 2	B	140	148	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	50	first strand
Strand 2	E	58	67	anti-parallel
Strand 3	E	73	75	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	50	first strand
Strand 2	E	58	67	anti-parallel
Strand 3	E	86	87	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	154	first strand
Strand 2	E	96	104	anti-parallel
Strand 3	E	162	172	anti-parallel
Strand 4	E	178	180	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	133	first strand
Strand 2	E	140	148	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	50	first strand
Strand 2	C	58	67	anti-parallel
Strand 3	C	73	75	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	50	first strand
Strand 2	C	58	67	anti-parallel
Strand 3	C	86	87	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	154	first strand
Strand 2	C	96	104	anti-parallel
Strand 3	C	162	172	anti-parallel
Strand 4	C	178	180	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	133	first strand
Strand 2	C	140	148	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	50	first strand
Strand 2	F	58	67	anti-parallel
Strand 3	F	73	75	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	50	first strand
Strand 2	F	58	67	anti-parallel
Strand 3	F	86	87	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	151	154	first strand
Strand 2	F	96	104	anti-parallel
Strand 3	F	162	172	anti-parallel
Strand 4	F	178	180	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	133	first strand
Strand 2	F	140	148	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6N38

Analysis of interatomic Contacts of Structural Units in PDB entry:
6N38