Analysis of interatomic Contacts of Structural Units in PDB entry:
6N39


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6N39 entry

There is 1 chain in PDB entry 6N39 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1PRO 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6N39. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 24Right-handed alpha
Helix 2
AA2
A
31 38Right-handed alpha
Helix 3
AA3
A
43 54Right-handed alpha
Helix 4
AA4
A
65 76Right-handed alpha
Helix 5
AA5
A
78 102Right-handed alpha
Helix 6
AA6
A
120 124Right-handed 310
Helix 7
AA7
A
133 146Right-handed alpha
Helix 8
AA8
A
148 158Right-handed alpha
Helix 9
AA9
A
161 169Right-handed alpha
Helix 10
AB1
A
178 193Right-handed alpha
Helix 11
AB2
A
193 203Right-handed alpha
Helix 12
AB3
A
219 236Right-handed alpha
Helix 13
AB4
A
246 250Right-handed 310
Helix 14
AB5
A
270 277Right-handed alpha
Helix 15
AB6
A
277 284Right-handed alpha
Helix 16
AB7
A
305 309Right-handed 310
Helix 17
AB8
A
313 318Right-handed 310
Helix 18
AB9
A
340 356Right-handed alpha
Helix 19
AC1
A
356 375Right-handed alpha
Helix 20
AC2
A
377 404Right-handed alpha
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There are 3 sheets in PDB entry 6N39. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
107 111parallel
Strand 3
A
2 8parallel
Strand 4
A
127 131parallel
Strand 5
A
171 174parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 214first strand
Strand 2
A
258 259anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 245first strand
Strand 2
A
262 268anti-parallel
Strand 3
A
331 337parallel
Strand 4
A
320 323anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il