Analysis of interatomic Contacts of Structural Units in PDB entry:
6N3Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6N3Q entry

There are 6 chains in PDB entry 6N3Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 10	PHE 468
C	VAL 26	VAL 80
B	ARG 51	PHE 82
D	THR 3	ASP 612
E	ASN 69	ARG 203
F	THR 3	GLY 192

There are 48 helices in PDB entry 6N3Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	48	Right-handed alpha
Helix 2	AA2	A	82	99	Right-handed alpha
Helix 3	AA3	A	107	137	Right-handed alpha
Helix 4	AA4	A	148	173	Right-handed alpha
Helix 5	AA5	A	179	199	Right-handed alpha
Helix 6	AA6	A	213	224	Right-handed alpha
Helix 7	AA7	A	227	237	Right-handed alpha
Helix 8	AA8	A	243	261	Right-handed alpha
Helix 9	AA9	A	291	310	Right-handed alpha
Helix 10	AB1	A	361	385	Right-handed alpha
Helix 11	AB2	A	387	399	Right-handed alpha
Helix 12	AB3	A	408	440	Right-handed alpha
Helix 13	AB4	A	444	466	Right-handed alpha
Helix 14	AB5	C	27	38	Right-handed alpha
Helix 15	AB6	C	43	79	Right-handed alpha
Helix 16	AB7	B	53	82	Right-handed alpha
Helix 17	AB8	D	13	36	Right-handed alpha
Helix 18	AB9	D	58	67	Right-handed alpha
Helix 19	AC1	D	68	78	Right-handed alpha
Helix 20	AC2	D	94	113	Right-handed alpha
Helix 21	AC3	D	218	249	Right-handed alpha
Helix 22	AC4	D	255	268	Right-handed alpha
Helix 23	AC5	D	278	285	Right-handed alpha
Helix 24	AC6	D	287	294	Right-handed alpha
Helix 25	AC7	D	298	311	Right-handed alpha
Helix 26	AC8	D	318	343	Right-handed alpha
Helix 27	AC9	D	345	362	Right-handed alpha
Helix 28	AD1	D	368	372	Right-handed 310
Helix 29	AD2	D	378	386	Right-handed alpha
Helix 30	AD3	D	391	396	Right-handed alpha
Helix 31	AD4	D	401	408	Right-handed alpha
Helix 32	AD5	D	411	424	Right-handed alpha
Helix 33	AD6	D	480	485	Right-handed alpha
Helix 34	AD7	D	487	493	Right-handed alpha
Helix 35	AD8	D	541	545	Right-handed 310
Helix 36	AD9	E	71	86	Right-handed alpha
Helix 37	AE1	E	88	124	Right-handed alpha
Helix 38	AE2	E	127	156	Right-handed alpha
Helix 39	AE3	E	161	182	Right-handed alpha
Helix 40	AE4	E	182	195	Right-handed alpha
Helix 41	AE5	F	21	42	Right-handed alpha
Helix 42	AE6	F	51	71	Right-handed alpha
Helix 43	AE7	F	73	91	Right-handed alpha
Helix 44	AE8	F	97	120	Right-handed alpha
Helix 45	AE9	F	121	136	Right-handed alpha
Helix 46	AF1	F	139	153	Right-handed alpha
Helix 47	AF2	F	155	168	Right-handed alpha
Helix 48	AF3	F	173	192	Right-handed alpha

There are 4 sheets in PDB entry 6N3Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	211	first strand
Strand 2	A	202	204	anti-parallel
Strand 3	D	205	207	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	281	first strand
Strand 2	A	267	271	anti-parallel
Strand 3	A	400	402	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	430	436	first strand
Strand 2	D	450	455	anti-parallel
Strand 3	D	571	574	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	530	532	first strand
Strand 2	D	513	516	anti-parallel
Strand 3	D	584	594	anti-parallel
Strand 4	D	602	610	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6N3Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
6N3Q