Analysis of interatomic Contacts of Structural Units in PDB entry:
6N40


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6N40 entry

There is 1 chain in PDB entry 6N40 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 752
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 6N40. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 12Right-handed alpha
Helix 2
AA2
A
12 31Right-handed alpha
Helix 3
AA3
A
32 36Right-handed 310
Helix 4
AA4
A
48 61Right-handed alpha
Helix 5
AA5
A
83 100Right-handed alpha
Helix 6
AA6
A
119 124Right-handed alpha
Helix 7
AA7
A
143 159Right-handed alpha
Helix 8
AA8
A
170 180Right-handed alpha
Helix 9
AA9
A
180 193Right-handed alpha
Helix 10
AB1
A
195 203Right-handed alpha
Helix 11
AB2
A
207 233Right-handed alpha
Helix 12
AB3
A
239 242Right-handed 310
Helix 13
AB4
A
243 248Right-handed alpha
Helix 14
AB5
A
248 271Right-handed alpha
Helix 15
AB6
A
274 283Right-handed alpha
Helix 16
AB7
A
285 302Right-handed alpha
Helix 17
AB8
A
303 307Right-handed 310
Helix 18
AB9
A
309 331Right-handed alpha
Helix 19
AC1
A
332 342Right-handed alpha
Helix 20
AC2
A
343 347Right-handed 310
Helix 21
AC3
A
349 353Right-handed 310
Helix 22
AC4
A
381 400Right-handed alpha
Helix 23
AC5
A
401 406Right-handed alpha
Helix 24
AC6
A
406 415Right-handed alpha
Helix 25
AC7
A
416 422Right-handed 310
Helix 26
AC8
A
428 432Right-handed 310
Helix 27
AC9
A
436 449Right-handed alpha
Helix 28
AD1
A
470 482Right-handed alpha
Helix 29
AD2
A
522 524Right-handed 310
Helix 30
AD3
A
525 536Right-handed alpha
Helix 31
AD4
A
548 583Right-handed alpha
Helix 32
AD5
A
587 612Right-handed alpha
Helix 33
AD6
A
616 621Right-handed alpha
Helix 34
AD7
A
629 640Right-handed alpha
Helix 35
AD8
A
642 659Right-handed alpha
Helix 36
AD9
A
663 674Right-handed alpha
Helix 37
AE1
A
677 692Right-handed alpha
Helix 38
AE2
A
698 717Right-handed alpha
Helix 39
AE3
A
717 722Right-handed alpha
Helix 40
AE4
A
722 732Right-handed alpha
Helix 41
AE5
A
733 735Right-handed 310
Helix 42
AE6
A
739 749Right-handed alpha
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There are 3 sheets in PDB entry 6N40. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
133 136anti-parallel
Strand 3
A
70 73anti-parallel
Strand 4
A
166 169anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 425first strand
Strand 2
A
627 628parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 518first strand
Strand 2
A
457 463anti-parallel
Strand 3
A
542 547anti-parallel
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