Analysis of interatomic Contacts of Structural Units in PDB entry:
6N46

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6N46 entry

There are 8 chains in PDB entry 6N46 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 3	PRO 222
B	ARG 3	PRO 222
C	ARG 3	PRO 222
D	ARG 3	PRO 222
E	ARG 3	PRO 222
F	ARG 3	PRO 222
G	ARG 3	PRO 222
H	ARG 3	PRO 222

There are 26 helices in PDB entry 6N46. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	97	113	Right-handed alpha
Helix 2	AA2	A	169	174	Right-handed alpha
Helix 3	AA3	A	177	206	Right-handed alpha
Helix 4	AA4	B	91	93	Right-handed 310
Helix 5	AA5	B	97	113	Right-handed alpha
Helix 6	AA6	B	169	176	Right-handed 310
Helix 7	AA7	B	177	206	Right-handed alpha
Helix 8	AA8	C	97	113	Right-handed alpha
Helix 9	AA9	C	169	174	Right-handed alpha
Helix 10	AB1	C	177	208	Right-handed alpha
Helix 11	AB2	D	97	113	Right-handed alpha
Helix 12	AB3	D	169	173	Right-handed 310
Helix 13	AB4	D	177	208	Right-handed alpha
Helix 14	AB5	E	97	113	Right-handed alpha
Helix 15	AB6	E	169	174	Right-handed alpha
Helix 16	AB7	E	177	207	Right-handed alpha
Helix 17	AB8	F	91	93	Right-handed 310
Helix 18	AB9	F	97	113	Right-handed alpha
Helix 19	AC1	F	169	174	Right-handed alpha
Helix 20	AC2	F	177	208	Right-handed alpha
Helix 21	AC3	G	97	113	Right-handed alpha
Helix 22	AC4	G	169	174	Right-handed alpha
Helix 23	AC5	G	177	206	Right-handed alpha
Helix 24	AC6	H	97	113	Right-handed alpha
Helix 25	AC7	H	169	174	Right-handed alpha
Helix 26	AC8	H	177	208	Right-handed alpha

There are 11 sheets in PDB entry 6N46. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	20	first strand
Strand 2	A	24	28	anti-parallel
Strand 3	A	34	40	anti-parallel
Strand 4	A	47	54	anti-parallel
Strand 5	A	60	64	anti-parallel
Strand 6	A	85	89	anti-parallel

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There are 20 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	167	first strand
Strand 2	A	155	158	anti-parallel
Strand 3	A	147	150	anti-parallel
Strand 4	A	138	142	anti-parallel
Strand 5	A	125	130	anti-parallel
Strand 6	A	116	121	anti-parallel
Strand 7	A	216	218	parallel
Strand 8	B	216	218	anti-parallel
Strand 9	B	116	121	parallel
Strand 10	B	125	130	anti-parallel
Strand 11	B	138	142	anti-parallel
Strand 12	B	147	150	anti-parallel
Strand 13	B	155	158	anti-parallel
Strand 14	B	164	167	anti-parallel
Strand 15	E	17	20	anti-parallel
Strand 16	E	24	28	anti-parallel
Strand 17	E	34	40	anti-parallel
Strand 18	E	47	54	anti-parallel
Strand 19	E	60	64	anti-parallel
Strand 20	E	85	89	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	20	first strand
Strand 2	B	25	28	anti-parallel
Strand 3	B	34	40	anti-parallel
Strand 4	B	47	54	anti-parallel
Strand 5	B	60	64	anti-parallel
Strand 6	B	85	89	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	20	first strand
Strand 2	C	24	28	anti-parallel
Strand 3	C	34	41	anti-parallel
Strand 4	C	46	54	anti-parallel
Strand 5	C	60	64	anti-parallel
Strand 6	C	85	89	anti-parallel

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There are 14 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	167	first strand
Strand 2	C	155	158	anti-parallel
Strand 3	C	147	150	anti-parallel
Strand 4	C	138	142	anti-parallel
Strand 5	C	125	130	anti-parallel
Strand 6	C	116	121	anti-parallel
Strand 7	C	216	218	parallel
Strand 8	D	216	218	anti-parallel
Strand 9	D	116	121	parallel
Strand 10	D	125	130	anti-parallel
Strand 11	D	138	142	anti-parallel
Strand 12	D	147	150	anti-parallel
Strand 13	D	155	158	anti-parallel
Strand 14	D	164	167	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	20	first strand
Strand 2	D	24	28	anti-parallel
Strand 3	D	34	40	anti-parallel
Strand 4	D	47	54	anti-parallel
Strand 5	D	60	64	anti-parallel
Strand 6	D	85	89	anti-parallel

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There are 14 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	167	first strand
Strand 2	E	155	158	anti-parallel
Strand 3	E	147	150	anti-parallel
Strand 4	E	138	142	anti-parallel
Strand 5	E	125	130	anti-parallel
Strand 6	E	116	121	anti-parallel
Strand 7	E	216	218	parallel
Strand 8	F	216	218	anti-parallel
Strand 9	F	116	121	parallel
Strand 10	F	125	130	anti-parallel
Strand 11	F	138	142	anti-parallel
Strand 12	F	147	150	anti-parallel
Strand 13	F	155	158	anti-parallel
Strand 14	F	164	167	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	20	first strand
Strand 2	F	24	28	anti-parallel
Strand 3	F	34	42	anti-parallel
Strand 4	F	45	54	anti-parallel
Strand 5	F	60	64	anti-parallel
Strand 6	F	85	89	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	17	20	first strand
Strand 2	G	24	28	anti-parallel
Strand 3	G	34	40	anti-parallel
Strand 4	G	47	54	anti-parallel
Strand 5	G	60	64	anti-parallel
Strand 6	G	85	89	anti-parallel

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There are 14 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	164	167	first strand
Strand 2	G	155	158	anti-parallel
Strand 3	G	147	150	anti-parallel
Strand 4	G	138	142	anti-parallel
Strand 5	G	125	130	anti-parallel
Strand 6	G	116	121	anti-parallel
Strand 7	G	216	218	parallel
Strand 8	H	216	218	anti-parallel
Strand 9	H	116	121	parallel
Strand 10	H	125	130	anti-parallel
Strand 11	H	138	142	anti-parallel
Strand 12	H	147	150	anti-parallel
Strand 13	H	155	158	anti-parallel
Strand 14	H	164	167	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	20	first strand
Strand 2	H	24	28	anti-parallel
Strand 3	H	34	40	anti-parallel
Strand 4	H	47	54	anti-parallel
Strand 5	H	60	64	anti-parallel
Strand 6	H	85	89	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6N46

Analysis of interatomic Contacts of Structural Units in PDB entry:
6N46