Analysis of interatomic Contacts of Structural Units in PDB entry:
6N4Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6N4Y entry

There are 8 chains in PDB entry 6N4Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 24	THR 563
B	GLU 24	CYS 565
C	ARG 26	PRO 536
D	ARG 25	CYS 565
E	GLN 3	SER 125
F	GLN 3	SER 125
G	GLN 3	SER 125
H	GLN 5	SER 124

There are 77 helices in PDB entry 6N4Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	82	Right-handed alpha
Helix 2	AA2	A	101	119	Right-handed alpha
Helix 3	AA3	A	151	163	Right-handed alpha
Helix 4	AA4	A	176	181	Right-handed 310
Helix 5	AA5	A	194	209	Right-handed alpha
Helix 6	AA6	A	221	238	Right-handed alpha
Helix 7	AA7	A	253	267	Right-handed alpha
Helix 8	AA8	A	279	294	Right-handed alpha
Helix 9	AA9	A	305	308	Right-handed 310
Helix 10	AB1	A	310	315	Right-handed alpha
Helix 11	AB2	A	317	322	Right-handed alpha
Helix 12	AB3	A	334	343	Right-handed alpha
Helix 13	AB4	A	354	363	Right-handed alpha
Helix 14	AB5	A	396	419	Right-handed alpha
Helix 15	AB6	A	426	430	Right-handed 310
Helix 16	AB7	A	433	443	Right-handed alpha
Helix 17	AB8	B	65	82	Right-handed alpha
Helix 18	AB9	B	101	113	Right-handed alpha
Helix 19	AC1	B	114	118	Right-handed 310
Helix 20	AC2	B	151	163	Right-handed alpha
Helix 21	AC3	B	176	181	Right-handed 310
Helix 22	AC4	B	194	208	Right-handed alpha
Helix 23	AC5	B	221	238	Right-handed alpha
Helix 24	AC6	B	253	267	Right-handed alpha
Helix 25	AC7	B	279	294	Right-handed alpha
Helix 26	AC8	B	305	308	Right-handed 310
Helix 27	AC9	B	310	315	Right-handed alpha
Helix 28	AD1	B	317	322	Right-handed alpha
Helix 29	AD2	B	334	342	Right-handed alpha
Helix 30	AD3	B	354	363	Right-handed alpha
Helix 31	AD4	B	396	419	Right-handed alpha
Helix 32	AD5	B	426	430	Right-handed 310
Helix 33	AD6	B	433	442	Right-handed alpha
Helix 34	AD7	C	65	82	Right-handed alpha
Helix 35	AD8	C	101	114	Right-handed alpha
Helix 36	AD9	C	115	118	Right-handed 310
Helix 37	AE1	C	151	163	Right-handed alpha
Helix 38	AE2	C	176	181	Right-handed 310
Helix 39	AE3	C	194	209	Right-handed alpha
Helix 40	AE4	C	221	238	Right-handed alpha
Helix 41	AE5	C	252	268	Right-handed alpha
Helix 42	AE6	C	279	293	Right-handed alpha
Helix 43	AE7	C	305	308	Right-handed 310
Helix 44	AE8	C	310	315	Right-handed alpha
Helix 45	AE9	C	317	322	Right-handed alpha
Helix 46	AF1	C	334	342	Right-handed alpha
Helix 47	AF2	C	354	363	Right-handed alpha
Helix 48	AF3	C	396	419	Right-handed alpha
Helix 49	AF4	C	426	430	Right-handed 310
Helix 50	AF5	C	433	443	Right-handed alpha
Helix 51	AF6	D	65	82	Right-handed alpha
Helix 52	AF7	D	101	114	Right-handed alpha
Helix 53	AF8	D	115	118	Right-handed 310
Helix 54	AF9	D	151	163	Right-handed alpha
Helix 55	AG1	D	164	166	Right-handed 310
Helix 56	AG2	D	176	181	Right-handed 310
Helix 57	AG3	D	194	209	Right-handed alpha
Helix 58	AG4	D	221	238	Right-handed alpha
Helix 59	AG5	D	253	266	Right-handed alpha
Helix 60	AG6	D	279	294	Right-handed alpha
Helix 61	AG7	D	305	308	Right-handed 310
Helix 62	AG8	D	310	314	Right-handed 310
Helix 63	AG9	D	317	322	Right-handed alpha
Helix 64	AH1	D	334	343	Right-handed alpha
Helix 65	AH2	D	354	363	Right-handed alpha
Helix 66	AH3	D	396	419	Right-handed alpha
Helix 67	AH4	D	426	430	Right-handed 310
Helix 68	AH5	D	433	443	Right-handed alpha
Helix 69	AH6	E	30	34	Right-handed 310
Helix 70	AH7	E	89	93	Right-handed 310
Helix 71	AH8	F	30	34	Right-handed 310
Helix 72	AH9	F	89	93	Right-handed 310
Helix 73	AI1	G	30	34	Right-handed 310
Helix 74	AI2	G	89	93	Right-handed 310
Helix 75	AI3	H	30	34	Right-handed 310
Helix 76	AI4	H	64	67	Right-handed 310
Helix 77	AI5	H	76	78	Right-handed 310

There are 32 sheets in PDB entry 6N4Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	91	97	anti-parallel
Strand 3	A	35	41	parallel
Strand 4	A	143	147	parallel
Strand 5	A	169	171	parallel
Strand 6	A	188	190	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	248	first strand
Strand 2	A	213	219	parallel
Strand 3	A	273	277	parallel
Strand 4	A	300	303	parallel
Strand 5	A	325	329	parallel
Strand 6	A	465	473	anti-parallel
Strand 7	A	479	488	anti-parallel
Strand 8	A	491	494	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	447	first strand
Strand 2	A	453	455	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	522	524	first strand
Strand 2	A	532	534	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	91	97	anti-parallel
Strand 3	B	35	41	parallel
Strand 4	B	143	147	parallel
Strand 5	B	169	171	parallel
Strand 6	B	188	190	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	248	first strand
Strand 2	B	213	219	parallel
Strand 3	B	273	277	parallel
Strand 4	B	300	303	parallel
Strand 5	B	325	329	parallel
Strand 6	B	465	475	anti-parallel
Strand 7	B	478	488	anti-parallel
Strand 8	B	491	493	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	366	first strand
Strand 2	B	379	380	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	447	first strand
Strand 2	B	453	455	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	523	first strand
Strand 2	B	533	535	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	543	first strand
Strand 2	B	549	551	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	91	97	anti-parallel
Strand 3	C	35	41	parallel
Strand 4	C	143	147	parallel
Strand 5	C	169	171	parallel
Strand 6	C	188	190	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	241	248	first strand
Strand 2	C	213	219	parallel
Strand 3	C	273	277	parallel
Strand 4	C	300	303	parallel
Strand 5	C	325	329	parallel
Strand 6	C	465	475	anti-parallel
Strand 7	C	478	488	anti-parallel
Strand 8	C	491	494	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	366	first strand
Strand 2	C	379	380	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	447	first strand
Strand 2	C	453	455	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	521	523	first strand
Strand 2	C	533	535	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand
Strand 2	D	91	97	anti-parallel
Strand 3	D	35	41	parallel
Strand 4	D	143	147	parallel
Strand 5	D	169	171	parallel
Strand 6	D	188	190	parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	248	first strand
Strand 2	D	213	219	parallel
Strand 3	D	273	277	parallel
Strand 4	D	300	303	parallel
Strand 5	D	325	329	parallel
Strand 6	D	465	473	anti-parallel
Strand 7	D	479	488	anti-parallel
Strand 8	D	491	494	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	445	447	first strand
Strand 2	D	453	455	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	521	523	first strand
Strand 2	D	533	535	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	541	545	first strand
Strand 2	D	548	551	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	9	first strand
Strand 2	E	19	26	anti-parallel
Strand 3	E	80	86	anti-parallel
Strand 4	E	70	75	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	15	first strand
Strand 2	E	119	124	parallel
Strand 3	E	94	101	anti-parallel
Strand 4	E	35	41	anti-parallel
Strand 5	E	48	53	anti-parallel
Strand 6	E	60	62	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	15	first strand
Strand 2	E	119	124	parallel
Strand 3	E	94	101	anti-parallel
Strand 4	E	112	115	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	9	first strand
Strand 2	F	20	27	anti-parallel
Strand 3	F	80	85	anti-parallel
Strand 4	F	70	75	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	15	first strand
Strand 2	F	119	124	parallel
Strand 3	F	94	104	anti-parallel
Strand 4	F	35	41	anti-parallel
Strand 5	F	48	53	anti-parallel
Strand 6	F	60	62	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	15	first strand
Strand 2	F	119	124	parallel
Strand 3	F	94	104	anti-parallel
Strand 4	F	110	115	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	9	first strand
Strand 2	G	20	26	anti-parallel
Strand 3	G	80	85	anti-parallel
Strand 4	G	70	75	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	14	first strand
Strand 2	G	119	123	parallel
Strand 3	G	94	104	anti-parallel
Strand 4	G	35	41	anti-parallel
Strand 5	G	48	53	anti-parallel
Strand 6	G	60	62	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	14	first strand
Strand 2	G	119	123	parallel
Strand 3	G	94	104	anti-parallel
Strand 4	G	110	114	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	9	first strand
Strand 2	H	20	26	anti-parallel
Strand 3	H	80	85	anti-parallel
Strand 4	H	70	75	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	15	first strand
Strand 2	H	119	124	parallel
Strand 3	H	95	101	anti-parallel
Strand 4	H	35	41	anti-parallel
Strand 5	H	48	53	anti-parallel
Strand 6	H	60	62	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	15	first strand
Strand 2	H	119	124	parallel
Strand 3	H	95	101	anti-parallel
Strand 4	H	114	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6N4Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
6N4Y