Analysis of interatomic Contacts of Structural Units in PDB entry:
6N52

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6N52 entry

There are 2 chains in PDB entry 6N52 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 26	ASN 832
B	ARG 26	ASN 832

There are 50 helices in PDB entry 6N52. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	52	Right-handed 310
Helix 2	AA2	A	65	81	Right-handed alpha
Helix 3	AA3	A	101	122	Right-handed alpha
Helix 4	AA4	A	151	163	Right-handed alpha
Helix 5	AA5	A	164	166	Right-handed 310
Helix 6	AA6	A	176	181	Right-handed 310
Helix 7	AA7	A	195	210	Right-handed alpha
Helix 8	AA8	A	221	236	Right-handed alpha
Helix 9	AA9	A	253	266	Right-handed alpha
Helix 10	AB1	A	279	294	Right-handed alpha
Helix 11	AB2	A	305	308	Right-handed 310
Helix 12	AB3	A	334	343	Right-handed alpha
Helix 13	AB4	A	354	363	Right-handed alpha
Helix 14	AB5	A	396	419	Right-handed alpha
Helix 15	AB6	A	426	430	Right-handed 310
Helix 16	AB7	A	434	443	Right-handed alpha
Helix 17	AB8	A	577	598	Right-handed alpha
Helix 18	AB9	A	607	612	Right-handed alpha
Helix 19	AC1	A	616	636	Right-handed alpha
Helix 20	AC2	A	642	668	Right-handed alpha
Helix 21	AC3	A	692	715	Right-handed alpha
Helix 22	AC4	A	736	761	Right-handed alpha
Helix 23	AC5	A	765	794	Right-handed alpha
Helix 24	AC6	A	799	816	Right-handed alpha
Helix 25	AC7	A	828	832	Right-handed 310
Helix 26	AC8	B	48	52	Right-handed 310
Helix 27	AC9	B	65	81	Right-handed alpha
Helix 28	AD1	B	101	122	Right-handed alpha
Helix 29	AD2	B	151	163	Right-handed alpha
Helix 30	AD3	B	164	166	Right-handed 310
Helix 31	AD4	B	176	181	Right-handed 310
Helix 32	AD5	B	195	210	Right-handed alpha
Helix 33	AD6	B	221	236	Right-handed alpha
Helix 34	AD7	B	253	266	Right-handed alpha
Helix 35	AD8	B	279	294	Right-handed alpha
Helix 36	AD9	B	305	308	Right-handed 310
Helix 37	AE1	B	334	343	Right-handed alpha
Helix 38	AE2	B	354	363	Right-handed alpha
Helix 39	AE3	B	396	419	Right-handed alpha
Helix 40	AE4	B	426	430	Right-handed 310
Helix 41	AE5	B	434	443	Right-handed alpha
Helix 42	AE6	B	577	598	Right-handed alpha
Helix 43	AE7	B	607	612	Right-handed alpha
Helix 44	AE8	B	616	636	Right-handed alpha
Helix 45	AE9	B	642	668	Right-handed alpha
Helix 46	AF1	B	692	715	Right-handed alpha
Helix 47	AF2	B	736	761	Right-handed alpha
Helix 48	AF3	B	765	794	Right-handed alpha
Helix 49	AF4	B	799	816	Right-handed alpha
Helix 50	AF5	B	828	832	Right-handed 310

There are 20 sheets in PDB entry 6N52. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	91	97	anti-parallel
Strand 3	A	35	41	parallel
Strand 4	A	143	147	parallel
Strand 5	A	169	171	parallel
Strand 6	A	188	190	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	242	first strand
Strand 2	A	213	219	parallel
Strand 3	A	246	248	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	242	first strand
Strand 2	A	213	219	parallel
Strand 3	A	273	277	parallel
Strand 4	A	300	303	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	329	first strand
Strand 2	A	465	472	anti-parallel
Strand 3	A	480	488	anti-parallel
Strand 4	A	491	494	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	366	first strand
Strand 2	A	379	380	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	447	first strand
Strand 2	A	453	455	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	521	first strand
Strand 2	A	535	536	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	543	first strand
Strand 2	A	549	551	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	557	first strand
Strand 2	A	566	567	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	719	720	first strand
Strand 2	A	732	733	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	91	97	anti-parallel
Strand 3	B	35	41	parallel
Strand 4	B	143	147	parallel
Strand 5	B	169	171	parallel
Strand 6	B	188	190	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	242	first strand
Strand 2	B	213	219	parallel
Strand 3	B	246	248	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	242	first strand
Strand 2	B	213	219	parallel
Strand 3	B	273	277	parallel
Strand 4	B	300	303	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	329	first strand
Strand 2	B	465	472	anti-parallel
Strand 3	B	480	488	anti-parallel
Strand 4	B	491	494	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	366	first strand
Strand 2	B	379	380	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	447	first strand
Strand 2	B	453	455	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	521	first strand
Strand 2	B	535	536	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	543	first strand
Strand 2	B	549	551	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	556	557	first strand
Strand 2	B	566	567	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	719	720	first strand
Strand 2	B	732	733	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6N52

Analysis of interatomic Contacts of Structural Units in PDB entry:
6N52