Analysis of interatomic Contacts of Structural Units in PDB entry:
6N5D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6N5D entry

There are 9 chains in PDB entry 6N5D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 37	THR 318
C	VAL 2	ASP 223
B	THR 37	THR 318
E	VAL 2	ASP 223
K	THR 37	THR 318
L	VAL 2	ASP 223
N	GLN 1	THR 212
F	GLN 1	THR 212
D	GLN 1	THR 212

There are 32 helices in PDB entry 6N5D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	72	Right-handed alpha
Helix 2	AA2	A	73	80	Right-handed 310
Helix 3	AA3	A	104	114	Right-handed alpha
Helix 4	AA4	A	187	195	Right-handed alpha
Helix 5	AA5	C	87	91	Right-handed 310
Helix 6	AA6	C	162	164	Right-handed 310
Helix 7	AA7	C	191	196	Right-handed 310
Helix 8	AA8	B	65	72	Right-handed alpha
Helix 9	AA9	B	76	80	Right-handed 310
Helix 10	AB1	B	104	114	Right-handed alpha
Helix 11	AB2	B	187	195	Right-handed alpha
Helix 12	AB3	E	87	91	Right-handed 310
Helix 13	AB4	E	177	181	Right-handed 310
Helix 14	AB5	E	191	196	Right-handed 310
Helix 15	AB6	K	65	72	Right-handed alpha
Helix 16	AB7	K	76	80	Right-handed 310
Helix 17	AB8	K	104	114	Right-handed alpha
Helix 18	AB9	K	187	195	Right-handed alpha
Helix 19	AC1	L	87	91	Right-handed 310
Helix 20	AC2	L	191	195	Right-handed 310
Helix 21	AC3	N	30	34	Right-handed 310
Helix 22	AC4	N	81	85	Right-handed 310
Helix 23	AC5	N	124	130	Right-handed alpha
Helix 24	AC6	N	184	191	Right-handed alpha
Helix 25	AC7	F	30	34	Right-handed 310
Helix 26	AC8	F	81	85	Right-handed 310
Helix 27	AC9	F	124	130	Right-handed alpha
Helix 28	AD1	F	184	191	Right-handed alpha
Helix 29	AD2	D	30	34	Right-handed 310
Helix 30	AD3	D	81	85	Right-handed 310
Helix 31	AD4	D	124	130	Right-handed alpha
Helix 32	AD5	D	184	191	Right-handed alpha

There are 51 sheets in PDB entry 6N5D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	41	first strand
Strand 2	A	315	317	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	294	295	parallel
Strand 3	A	307	308	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	54	first strand
Strand 2	A	274	278	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	61	first strand
Strand 2	A	86	89	parallel
Strand 3	A	266	269	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	101	first strand
Strand 2	A	229	237	parallel
Strand 3	A	176	184	anti-parallel
Strand 4	A	256	259	anti-parallel
Strand 5	A	120	122	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	101	first strand
Strand 2	A	229	237	parallel
Strand 3	A	176	184	anti-parallel
Strand 4	A	251	254	anti-parallel
Strand 5	A	151	153	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	169	first strand
Strand 2	A	242	249	anti-parallel
Strand 3	A	201	205	anti-parallel
Strand 4	A	210	213	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	113	117	parallel
Strand 3	C	92	98	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	130	first strand
Strand 2	C	143	151	anti-parallel
Strand 3	C	182	189	anti-parallel
Strand 4	C	169	172	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	160	first strand
Strand 2	C	201	206	anti-parallel
Strand 3	C	211	216	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	41	first strand
Strand 2	B	315	317	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	44	first strand
Strand 2	B	294	295	parallel
Strand 3	B	307	308	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	274	278	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	61	first strand
Strand 2	B	86	89	parallel
Strand 3	B	266	269	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	101	first strand
Strand 2	B	229	237	parallel
Strand 3	B	176	184	anti-parallel
Strand 4	B	256	259	anti-parallel
Strand 5	B	120	122	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	101	first strand
Strand 2	B	229	237	parallel
Strand 3	B	176	184	anti-parallel
Strand 4	B	251	254	anti-parallel
Strand 5	B	151	153	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	169	first strand
Strand 2	B	242	249	anti-parallel
Strand 3	B	201	205	anti-parallel
Strand 4	B	210	213	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	113	117	parallel
Strand 3	E	92	97	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	130	first strand
Strand 2	E	144	151	anti-parallel
Strand 3	E	182	188	anti-parallel
Strand 4	E	169	171	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	160	first strand
Strand 2	E	200	205	anti-parallel
Strand 3	E	213	217	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	40	41	first strand
Strand 2	K	315	316	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	43	44	first strand
Strand 2	K	294	295	parallel
Strand 3	K	307	308	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	51	52	first strand
Strand 2	K	274	275	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	58	61	first strand
Strand 2	K	86	89	parallel
Strand 3	K	266	269	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	100	101	first strand
Strand 2	K	229	237	parallel
Strand 3	K	176	184	anti-parallel
Strand 4	K	256	259	anti-parallel
Strand 5	K	120	122	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	100	101	first strand
Strand 2	K	229	237	parallel
Strand 3	K	176	184	anti-parallel
Strand 4	K	251	254	anti-parallel
Strand 5	K	151	153	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	166	169	first strand
Strand 2	K	242	249	anti-parallel
Strand 3	K	201	205	anti-parallel
Strand 4	K	210	213	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	7	first strand
Strand 2	L	17	25	anti-parallel
Strand 3	L	78	84	anti-parallel
Strand 4	L	68	73	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	113	117	parallel
Strand 3	L	92	99	anti-parallel
Strand 4	L	33	39	anti-parallel
Strand 5	L	45	51	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	126	130	first strand
Strand 2	L	143	151	anti-parallel
Strand 3	L	182	189	anti-parallel
Strand 4	L	169	176	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	157	160	first strand
Strand 2	L	200	205	anti-parallel
Strand 3	L	213	217	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	9	12	first strand
Strand 2	N	104	108	parallel
Strand 3	N	86	93	anti-parallel
Strand 4	N	36	41	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	55	56	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	9	12	first strand
Strand 2	N	104	108	parallel
Strand 3	N	86	93	anti-parallel
Strand 4	N	98	100	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	17	22	first strand
Strand 2	N	73	78	anti-parallel
Strand 3	N	64	67	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	117	121	first strand
Strand 2	N	133	142	anti-parallel
Strand 3	N	175	183	anti-parallel
Strand 4	N	162	164	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	117	121	first strand
Strand 2	N	133	142	anti-parallel
Strand 3	N	175	183	anti-parallel
Strand 4	N	168	169	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	156	158	first strand
Strand 2	N	148	153	anti-parallel
Strand 3	N	194	200	anti-parallel
Strand 4	N	203	209	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	5	first strand
Strand 2	F	17	24	anti-parallel
Strand 3	F	73	78	anti-parallel
Strand 4	F	64	67	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	104	108	parallel
Strand 3	F	87	93	anti-parallel
Strand 4	F	36	40	anti-parallel
Strand 5	F	48	51	anti-parallel
Strand 6	F	55	56	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	104	108	parallel
Strand 3	F	87	93	anti-parallel
Strand 4	F	98	100	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	117	121	first strand
Strand 2	F	133	142	anti-parallel
Strand 3	F	175	183	anti-parallel
Strand 4	F	162	164	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	117	121	first strand
Strand 2	F	133	142	anti-parallel
Strand 3	F	175	183	anti-parallel
Strand 4	F	168	169	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	156	158	first strand
Strand 2	F	148	153	anti-parallel
Strand 3	F	194	200	anti-parallel
Strand 4	F	203	209	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	5	first strand
Strand 2	D	17	24	anti-parallel
Strand 3	D	73	78	anti-parallel
Strand 4	D	64	67	anti-parallel

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There are 6 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	104	108	parallel
Strand 3	D	87	93	anti-parallel
Strand 4	D	36	41	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	55	56	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	104	108	parallel
Strand 3	D	87	93	anti-parallel
Strand 4	D	98	100	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	121	first strand
Strand 2	D	133	142	anti-parallel
Strand 3	D	175	183	anti-parallel
Strand 4	D	162	164	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	121	first strand
Strand 2	D	133	142	anti-parallel
Strand 3	D	175	183	anti-parallel
Strand 4	D	168	169	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	158	first strand
Strand 2	D	148	153	anti-parallel
Strand 3	D	194	200	anti-parallel
Strand 4	D	203	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6N5D

Analysis of interatomic Contacts of Structural Units in PDB entry:
6N5D