Analysis of interatomic Contacts of Structural Units in PDB entry:
6N62

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6N62 entry

There are 8 chains in PDB entry 6N62 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 6	GLU 235
B	THR 6	LEU 234
C	TYR 3	GLU 1342
D	GLU 16	ALA 1375
E	ALA 2	LEU 80
F	THR 94	ASP 613
N	G 1	T 29
T	A 1	C 24

There are131 helices in PDB entry 6N62. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	50	Right-handed alpha
Helix 2	AA2	A	77	86	Right-handed alpha
Helix 3	AA3	A	154	159	Right-handed alpha
Helix 4	AA4	A	212	227	Right-handed alpha
Helix 5	AA5	A	228	232	Right-handed 310
Helix 6	AA6	B	34	50	Right-handed alpha
Helix 7	AA7	B	77	87	Right-handed alpha
Helix 8	AA8	B	212	229	Right-handed alpha
Helix 9	AA9	C	28	39	Right-handed alpha
Helix 10	AB1	C	48	57	Right-handed alpha
Helix 11	AB2	C	81	89	Right-handed alpha
Helix 12	AB3	C	163	167	Right-handed 310
Helix 13	AB4	C	206	213	Right-handed alpha
Helix 14	AB5	C	216	225	Right-handed alpha
Helix 15	AB6	C	256	260	Right-handed 310
Helix 16	AB7	C	270	280	Right-handed alpha
Helix 17	AB8	C	291	294	Right-handed 310
Helix 18	AB9	C	318	329	Right-handed alpha
Helix 19	AC1	C	345	354	Right-handed alpha
Helix 20	AC2	C	358	371	Right-handed alpha
Helix 21	AC3	C	377	387	Right-handed alpha
Helix 22	AC4	C	397	409	Right-handed alpha
Helix 23	AC5	C	421	437	Right-handed alpha
Helix 24	AC6	C	447	449	Right-handed 310
Helix 25	AC7	C	455	481	Right-handed alpha
Helix 26	AC8	C	494	508	Right-handed alpha
Helix 27	AC9	C	519	527	Right-handed alpha
Helix 28	AD1	C	551	555	Right-handed 310
Helix 29	AD2	C	608	612	Right-handed alpha
Helix 30	AD3	C	656	660	Right-handed 310
Helix 31	AD4	C	662	668	Right-handed alpha
Helix 32	AD5	C	670	674	Right-handed 310
Helix 33	AD6	C	675	687	Right-handed alpha
Helix 34	AD7	C	705	710	Right-handed alpha
Helix 35	AD8	C	738	741	Right-handed 310
Helix 36	AD9	C	819	825	Right-handed alpha
Helix 37	AE1	C	861	865	Right-handed 310
Helix 38	AE2	C	896	906	Right-handed alpha
Helix 39	AE3	C	942	981	Right-handed alpha
Helix 40	AE4	C	985	992	Right-handed alpha
Helix 41	AE5	C	995	1000	Right-handed alpha
Helix 42	AE6	C	1006	1038	Right-handed alpha
Helix 43	AE7	C	1099	1103	Right-handed 310
Helix 44	AE8	C	1109	1134	Right-handed alpha
Helix 45	AE9	C	1137	1150	Right-handed alpha
Helix 46	AF1	C	1164	1176	Right-handed alpha
Helix 47	AF2	C	1191	1202	Right-handed alpha
Helix 48	AF3	C	1238	1243	Right-handed alpha
Helix 49	AF4	C	1271	1281	Right-handed alpha
Helix 50	AF5	C	1284	1292	Right-handed alpha
Helix 51	AF6	C	1297	1309	Right-handed alpha
Helix 52	AF7	C	1320	1332	Right-handed alpha
Helix 53	AF8	D	26	34	Right-handed alpha
Helix 54	AF9	D	94	100	Right-handed 310
Helix 55	AG1	D	114	119	Right-handed alpha
Helix 56	AG2	D	122	128	Right-handed alpha
Helix 57	AG3	D	131	140	Right-handed alpha
Helix 58	AG4	D	161	167	Right-handed alpha
Helix 59	AG5	D	181	192	Right-handed alpha
Helix 60	AG6	D	195	205	Right-handed alpha
Helix 61	AG7	D	210	215	Right-handed 310
Helix 62	AG8	D	216	231	Right-handed alpha
Helix 63	AG9	D	233	236	Right-handed 310
Helix 64	AH1	D	255	259	Right-handed 310
Helix 65	AH2	D	263	285	Right-handed alpha
Helix 66	AH3	D	288	308	Right-handed alpha
Helix 67	AH4	D	327	331	Right-handed 310
Helix 68	AH5	D	370	388	Right-handed alpha
Helix 69	AH6	D	393	403	Right-handed alpha
Helix 70	AH7	D	405	417	Right-handed alpha
Helix 71	AH8	D	430	432	Right-handed 310
Helix 72	AH9	D	450	452	Right-handed 310
Helix 73	AI1	D	453	458	Right-handed alpha
Helix 74	AI2	D	473	483	Right-handed alpha
Helix 75	AI3	D	485	489	Right-handed 310
Helix 76	AI4	D	503	514	Right-handed alpha
Helix 77	AI5	D	529	539	Right-handed alpha
Helix 78	AI6	D	573	580	Right-handed alpha
Helix 79	AI7	D	589	593	Right-handed 310
Helix 80	AI8	D	597	613	Right-handed alpha
Helix 81	AI9	D	613	635	Right-handed alpha
Helix 82	AJ1	D	649	660	Right-handed alpha
Helix 83	AJ2	D	661	670	Right-handed alpha
Helix 84	AJ3	D	674	702	Right-handed alpha
Helix 85	AJ4	D	720	728	Right-handed alpha
Helix 86	AJ5	D	734	742	Right-handed alpha
Helix 87	AJ6	D	768	788	Right-handed alpha
Helix 88	AJ7	D	789	805	Right-handed alpha
Helix 89	AJ8	D	865	875	Right-handed alpha
Helix 90	AJ9	D	896	900	Right-handed alpha
Helix 91	AK1	D	914	925	Right-handed alpha
Helix 92	AK2	D	926	930	Right-handed 310
Helix 93	AK3	D	1137	1147	Right-handed alpha
Helix 94	AK4	D	1216	1224	Right-handed alpha
Helix 95	AK5	D	1225	1244	Right-handed alpha
Helix 96	AK6	D	1249	1261	Right-handed alpha
Helix 97	AK7	D	1281	1295	Right-handed alpha
Helix 98	AK8	D	1308	1313	Right-handed alpha
Helix 99	AK9	D	1318	1326	Right-handed alpha
Helix 100	AL1	D	1327	1338	Right-handed alpha
Helix 101	AL2	D	1346	1354	Right-handed alpha
Helix 102	AL3	D	1360	1373	Right-handed alpha
Helix 103	AL4	E	6	13	Right-handed alpha
Helix 104	AL5	E	17	32	Right-handed alpha
Helix 105	AL6	E	45	57	Right-handed alpha
Helix 106	AL7	E	60	75	Right-handed alpha
Helix 107	AL8	F	96	103	Right-handed alpha
Helix 108	AL9	F	114	135	Right-handed alpha
Helix 109	AM1	F	137	150	Right-handed alpha
Helix 110	AM2	F	223	231	Right-handed 310
Helix 111	AM3	F	249	255	Right-handed alpha
Helix 112	AM4	F	262	290	Right-handed alpha
Helix 113	AM5	F	298	307	Right-handed alpha
Helix 114	AM6	F	318	323	Right-handed 310
Helix 115	AM7	F	326	330	Right-handed 310
Helix 116	AM8	F	340	352	Right-handed alpha
Helix 117	AM9	F	354	383	Right-handed alpha
Helix 118	AN1	F	383	392	Right-handed alpha
Helix 119	AN2	F	400	418	Right-handed alpha
Helix 120	AN3	F	420	424	Right-handed 310
Helix 121	AN4	F	426	447	Right-handed alpha
Helix 122	AN5	F	453	470	Right-handed alpha
Helix 123	AN6	F	470	475	Right-handed alpha
Helix 124	AN7	F	482	487	Right-handed alpha
Helix 125	AN8	F	492	500	Right-handed alpha
Helix 126	AN9	F	518	523	Right-handed alpha
Helix 127	AO1	F	530	551	Right-handed alpha
Helix 128	AO2	F	552	563	Right-handed alpha
Helix 129	AO3	F	572	579	Right-handed alpha
Helix 130	AO4	F	585	600	Right-handed alpha
Helix 131	AO5	F	604	610	Right-handed alpha

There are 46 sheets in PDB entry 6N62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	17	first strand
Strand 2	A	23	31	anti-parallel
Strand 3	A	199	206	anti-parallel
Strand 4	A	182	188	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	99	first strand
Strand 2	A	145	148	anti-parallel
Strand 3	A	54	60	anti-parallel
Strand 4	A	170	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	105	first strand
Strand 2	A	139	142	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	129	133	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	175	177	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	17	first strand
Strand 2	B	23	29	anti-parallel
Strand 3	B	201	207	anti-parallel
Strand 4	B	180	182	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	17	first strand
Strand 2	B	23	29	anti-parallel
Strand 3	B	201	207	anti-parallel
Strand 4	B	185	186	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	60	first strand
Strand 2	B	143	147	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	122	123	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	129	131	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	175	176	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	74	first strand
Strand 2	C	93	102	anti-parallel
Strand 3	C	118	128	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	137	first strand
Strand 2	C	142	145	anti-parallel
Strand 3	C	512	514	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	454	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	530	531	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	158	first strand
Strand 2	C	173	177	anti-parallel
Strand 3	C	184	189	anti-parallel
Strand 4	C	193	198	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	239	first strand
Strand 2	C	285	286	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	297	first strand
Strand 2	C	315	316	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	302	first strand
Strand 2	C	309	311	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	589	anti-parallel
Strand 3	C	606	607	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	598	603	first strand
Strand 2	C	592	595	anti-parallel
Strand 3	C	652	653	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	634	637	first strand
Strand 2	C	642	645	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	700	701	first strand
Strand 2	C	1182	1183	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	782	785	anti-parallel
Strand 3	C	768	769	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	749	752	first strand
Strand 2	C	731	736	anti-parallel
Strand 3	C	722	726	anti-parallel
Strand 4	C	776	777	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	758	first strand
Strand 2	C	764	765	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	790	first strand
Strand 2	C	793	794	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	798	803	first strand
Strand 2	C	1220	1233	anti-parallel
Strand 3	C	1065	1068	anti-parallel
Strand 4	C	1073	1075	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	798	803	first strand
Strand 2	C	1220	1233	anti-parallel
Strand 3	C	1209	1213	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	817	818	first strand
Strand 2	C	1096	1097	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	846	847	first strand
Strand 2	C	832	843	anti-parallel
Strand 3	C	1046	1056	anti-parallel
Strand 4	C	927	935	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	882	884	first strand
Strand 2	C	918	919	anti-parallel

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There are 8 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	356	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	421	425	anti-parallel
Strand 5	D	434	442	anti-parallel
Strand 6	D	365	369	parallel
Strand 7	D	447	448	anti-parallel
Strand 8	D	350	356	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1268	1270	first strand
Strand 2	D	345	347	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1339	first strand
Strand 2	D	20	24	anti-parallel
Strand 3	D	1341	1342	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	112	first strand
Strand 2	D	238	244	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	144	147	anti-parallel
Strand 3	D	177	179	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	262	first strand
Strand 2	F	505	506	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	550	555	first strand
Strand 2	D	565	570	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	706	709	first strand
Strand 2	D	712	715	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	809	811	first strand
Strand 2	D	894	895	parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	822	first strand
Strand 2	D	880	882	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	991	996	first strand
Strand 2	D	981	985	anti-parallel
Strand 3	D	957	961	anti-parallel
Strand 4	D	1009	1010	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	965	967	first strand
Strand 2	D	973	975	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1175	1176	first strand
Strand 2	D	1187	1188	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1264	1266	first strand
Strand 2	D	1302	1304	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	164	first strand
Strand 2	F	260	261	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6N62

Analysis of interatomic Contacts of Structural Units in PDB entry:
6N62