Analysis of interatomic Contacts of Structural Units in PDB entry:
6N6P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6N6P entry

There is 1 chain in PDB entry 6N6P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 574
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 6N6P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 26Right-handed alpha
Helix 2
AA2
A
62 64Right-handed 310
Helix 3
AA3
A
76 92Right-handed alpha
Helix 4
AA4
A
107 117Right-handed alpha
Helix 5
AA5
A
151 162Right-handed alpha
Helix 6
AA6
A
179 183Right-handed 310
Helix 7
AA7
A
184 188Right-handed 310
Helix 8
AA8
A
194 200Right-handed alpha
Helix 9
AA9
A
210 220Right-handed alpha
Helix 10
AB1
A
231 242Right-handed 310
Helix 11
AB2
A
249 260Right-handed alpha
Helix 12
AB3
A
268 290Right-handed alpha
Helix 13
AB4
A
300 311Right-handed alpha
Helix 14
AB5
A
312 318Right-handed 310
Helix 15
AB6
A
323 333Right-handed alpha
Helix 16
AB7
A
334 339Right-handed alpha
Helix 17
AB8
A
343 345Right-handed 310
Helix 18
AB9
A
356 363Right-handed alpha
Helix 19
AC1
A
381 391Right-handed alpha
Helix 20
AC2
A
394 398Right-handed 310
Helix 21
AC3
A
404 408Right-handed 310
Helix 22
AC4
A
411 416Right-handed alpha
Helix 23
AC5
A
417 419Right-handed 310
Helix 24
AC6
A
421 437Right-handed alpha
Helix 25
AC7
A
445 449Right-handed 310
Helix 26
AC8
A
473 483Right-handed alpha
Helix 27
AC9
A
484 489Right-handed alpha
Helix 28
AD1
A
502 506Right-handed 310
Helix 29
AD2
A
513 520Right-handed alpha
Helix 30
AD3
A
521 537Right-handed alpha
Helix 31
AD4
A
541 544Right-handed 310
Helix 32
AD5
A
545 555Right-handed alpha
Helix 33
AD6
A
561 568Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6N6P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
71 73parallel
Strand 4
A
50 53anti-parallel
Strand 5
A
57 60anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
140 143anti-parallel
Strand 3
A
205 207anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 171first strand
Strand 2
A
174 178anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
224 229parallel
Strand 3
A
347 353parallel
Strand 4
A
377 380parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 296first strand
Strand 2
A
493 497parallel
Strand 3
A
464 472parallel
Strand 4
A
454 461anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 369first strand
Strand 2
A
372 373anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il