Analysis of interatomic Contacts of Structural Units in PDB entry:
6N6Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6N6Q entry

There are 4 chains in PDB entry 6N6Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 37	VAL 482
B	THR 21	ARG 481
C	ASP 37	VAL 482
D	ASP 37	ASN 480

There are 82 helices in PDB entry 6N6Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	55	Right-handed alpha
Helix 2	AA2	A	75	83	Right-handed alpha
Helix 3	AA3	A	93	99	Right-handed alpha
Helix 4	AA4	A	99	104	Right-handed alpha
Helix 5	AA5	A	114	125	Right-handed alpha
Helix 6	AA6	A	126	128	Right-handed 310
Helix 7	AA7	A	129	157	Right-handed alpha
Helix 8	AA8	A	163	181	Right-handed alpha
Helix 9	AA9	A	193	208	Right-handed alpha
Helix 10	AB1	A	216	221	Right-handed alpha
Helix 11	AB2	A	222	249	Right-handed alpha
Helix 12	AB3	A	257	265	Right-handed alpha
Helix 13	AB4	A	275	308	Right-handed alpha
Helix 14	AB5	A	308	323	Right-handed alpha
Helix 15	AB6	A	332	336	Right-handed 310
Helix 16	AB7	A	339	353	Right-handed alpha
Helix 17	AB8	A	386	391	Right-handed alpha
Helix 18	AB9	A	392	396	Right-handed 310
Helix 19	AC1	A	403	407	Right-handed 310
Helix 20	AC2	A	408	414	Right-handed alpha
Helix 21	AC3	A	432	450	Right-handed alpha
Helix 22	AC4	B	45	55	Right-handed alpha
Helix 23	AC5	B	75	83	Right-handed alpha
Helix 24	AC6	B	93	99	Right-handed alpha
Helix 25	AC7	B	99	104	Right-handed alpha
Helix 26	AC8	B	114	125	Right-handed alpha
Helix 27	AC9	B	126	128	Right-handed 310
Helix 28	AD1	B	132	135	Right-handed 310
Helix 29	AD2	B	136	158	Right-handed alpha
Helix 30	AD3	B	163	181	Right-handed alpha
Helix 31	AD4	B	193	208	Right-handed alpha
Helix 32	AD5	B	223	249	Right-handed alpha
Helix 33	AD6	B	257	265	Right-handed alpha
Helix 34	AD7	B	275	308	Right-handed alpha
Helix 35	AD8	B	308	323	Right-handed alpha
Helix 36	AD9	B	332	336	Right-handed 310
Helix 37	AE1	B	339	353	Right-handed alpha
Helix 38	AE2	B	386	390	Right-handed alpha
Helix 39	AE3	B	392	396	Right-handed 310
Helix 40	AE4	B	403	407	Right-handed 310
Helix 41	AE5	B	408	413	Right-handed alpha
Helix 42	AE6	B	425	429	Right-handed 310
Helix 43	AE7	B	432	450	Right-handed alpha
Helix 44	AE8	C	45	55	Right-handed alpha
Helix 45	AE9	C	75	83	Right-handed alpha
Helix 46	AF1	C	93	99	Right-handed alpha
Helix 47	AF2	C	99	104	Right-handed alpha
Helix 48	AF3	C	114	125	Right-handed alpha
Helix 49	AF4	C	126	128	Right-handed 310
Helix 50	AF5	C	129	158	Right-handed alpha
Helix 51	AF6	C	163	180	Right-handed alpha
Helix 52	AF7	C	193	207	Right-handed alpha
Helix 53	AF8	C	224	249	Right-handed alpha
Helix 54	AF9	C	257	265	Right-handed alpha
Helix 55	AG1	C	275	290	Right-handed alpha
Helix 56	AG2	C	290	308	Right-handed alpha
Helix 57	AG3	C	308	323	Right-handed alpha
Helix 58	AG4	C	332	337	Right-handed alpha
Helix 59	AG5	C	339	353	Right-handed alpha
Helix 60	AG6	C	386	391	Right-handed alpha
Helix 61	AG7	C	392	396	Right-handed 310
Helix 62	AG8	C	403	407	Right-handed 310
Helix 63	AG9	C	408	415	Right-handed alpha
Helix 64	AH1	C	432	449	Right-handed alpha
Helix 65	AH2	D	45	55	Right-handed alpha
Helix 66	AH3	D	75	83	Right-handed alpha
Helix 67	AH4	D	93	99	Right-handed alpha
Helix 68	AH5	D	114	125	Right-handed alpha
Helix 69	AH6	D	126	128	Right-handed 310
Helix 70	AH7	D	132	157	Right-handed alpha
Helix 71	AH8	D	163	181	Right-handed alpha
Helix 72	AH9	D	193	208	Right-handed alpha
Helix 73	AI1	D	224	246	Right-handed alpha
Helix 74	AI2	D	257	265	Right-handed alpha
Helix 75	AI3	D	275	308	Right-handed alpha
Helix 76	AI4	D	308	321	Right-handed alpha
Helix 77	AI5	D	339	353	Right-handed alpha
Helix 78	AI6	D	386	391	Right-handed alpha
Helix 79	AI7	D	392	396	Right-handed 310
Helix 80	AI8	D	403	407	Right-handed 310
Helix 81	AI9	D	408	413	Right-handed alpha
Helix 82	AJ1	D	432	451	Right-handed alpha

There are 17 sheets in PDB entry 6N6Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	64	first strand
Strand 2	A	68	73	anti-parallel
Strand 3	A	381	385	parallel
Strand 4	A	358	363	anti-parallel
Strand 5	A	88	90	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	64	first strand
Strand 2	A	68	73	anti-parallel
Strand 3	D	41	42	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	162	first strand
Strand 2	A	475	480	anti-parallel
Strand 3	A	451	455	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	368	first strand
Strand 2	A	375	376	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	465	first strand
Strand 2	A	469	472	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	71	73	anti-parallel
Strand 3	B	381	385	parallel
Strand 4	B	358	363	anti-parallel
Strand 5	B	88	90	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	162	first strand
Strand 2	B	475	480	anti-parallel
Strand 3	B	451	455	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	369	first strand
Strand 2	B	374	376	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	465	first strand
Strand 2	B	469	471	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	65	first strand
Strand 2	C	68	73	anti-parallel
Strand 3	C	381	385	parallel
Strand 4	C	358	363	anti-parallel
Strand 5	C	88	90	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	162	first strand
Strand 2	C	475	476	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	369	first strand
Strand 2	C	374	376	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	463	465	first strand
Strand 2	C	469	471	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	65	first strand
Strand 2	D	68	73	anti-parallel
Strand 3	D	381	385	parallel
Strand 4	D	358	363	anti-parallel
Strand 5	D	88	90	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	162	first strand
Strand 2	D	475	479	anti-parallel
Strand 3	D	452	455	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	367	369	first strand
Strand 2	D	374	376	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	463	465	first strand
Strand 2	D	469	471	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6N6Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
6N6Q