Analysis of interatomic Contacts of Structural Units in PDB entry:
6N7F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6N7F entry

There are 3 chains in PDB entry 6N7F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 0	ARG 450
B	MET 1	ARG 450
C	MET 1	LYS 361

There are 71 helices in PDB entry 6N7F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	26	Right-handed alpha
Helix 2	AA2	A	39	46	Right-handed alpha
Helix 3	AA3	A	46	65	Right-handed alpha
Helix 4	AA4	A	66	70	Right-handed 310
Helix 5	AA5	A	80	107	Right-handed alpha
Helix 6	AA6	A	150	154	Right-handed 310
Helix 7	AA7	A	156	163	Right-handed alpha
Helix 8	AA8	A	176	189	Right-handed alpha
Helix 9	AA9	A	207	221	Right-handed alpha
Helix 10	AB1	A	271	275	Right-handed 310
Helix 11	AB2	A	302	306	Right-handed 310
Helix 12	AB3	A	310	327	Right-handed alpha
Helix 13	AB4	A	355	364	Right-handed alpha
Helix 14	AB5	A	377	382	Right-handed alpha
Helix 15	AB6	A	411	425	Right-handed alpha
Helix 16	AB7	A	428	434	Right-handed alpha
Helix 17	AB8	A	442	448	Right-handed 310
Helix 18	AB9	B	13	26	Right-handed alpha
Helix 19	AC1	B	39	46	Right-handed alpha
Helix 20	AC2	B	46	65	Right-handed alpha
Helix 21	AC3	B	66	70	Right-handed 310
Helix 22	AC4	B	80	107	Right-handed alpha
Helix 23	AC5	B	150	154	Right-handed 310
Helix 24	AC6	B	156	163	Right-handed alpha
Helix 25	AC7	B	176	189	Right-handed alpha
Helix 26	AC8	B	207	221	Right-handed alpha
Helix 27	AC9	B	271	275	Right-handed 310
Helix 28	AD1	B	302	306	Right-handed 310
Helix 29	AD2	B	310	327	Right-handed alpha
Helix 30	AD3	B	355	364	Right-handed alpha
Helix 31	AD4	B	377	382	Right-handed alpha
Helix 32	AD5	B	411	414	Right-handed 310
Helix 33	AD6	B	415	425	Right-handed alpha
Helix 34	AD7	B	428	434	Right-handed alpha
Helix 35	AD8	B	442	447	Right-handed 310
Helix 36	AD9	C	13	26	Right-handed alpha
Helix 37	AE1	C	39	46	Right-handed alpha
Helix 38	AE2	C	46	65	Right-handed alpha
Helix 39	AE3	C	66	70	Right-handed 310
Helix 40	AE4	C	80	107	Right-handed alpha
Helix 41	AE5	C	150	154	Right-handed 310
Helix 42	AE6	C	156	163	Right-handed alpha
Helix 43	AE7	C	176	189	Right-handed alpha
Helix 44	AE8	C	207	221	Right-handed alpha
Helix 45	AE9	C	271	275	Right-handed 310
Helix 46	AF1	C	302	306	Right-handed 310
Helix 47	AF2	C	310	327	Right-handed alpha
Helix 48	AF3	C	355	364	Right-handed alpha
Helix 49	AF4	C	377	382	Right-handed alpha
Helix 50	AF5	C	411	414	Right-handed 310
Helix 51	AF6	C	415	425	Right-handed alpha
Helix 52	AF7	C	428	434	Right-handed alpha
Helix 53	AF8	C	442	448	Right-handed 310
Helix 54	AF9	D	13	26	Right-handed alpha
Helix 55	AG1	D	39	46	Right-handed alpha
Helix 56	AG2	D	46	65	Right-handed alpha
Helix 57	AG3	D	66	70	Right-handed 310
Helix 58	AG4	D	80	107	Right-handed alpha
Helix 59	AG5	D	150	154	Right-handed 310
Helix 60	AG6	D	156	163	Right-handed alpha
Helix 61	AG7	D	176	189	Right-handed alpha
Helix 62	AG8	D	207	221	Right-handed alpha
Helix 63	AG9	D	271	275	Right-handed 310
Helix 64	AH1	D	302	306	Right-handed 310
Helix 65	AH2	D	310	327	Right-handed alpha
Helix 66	AH3	D	355	364	Right-handed alpha
Helix 67	AH4	D	377	382	Right-handed alpha
Helix 68	AH5	D	411	414	Right-handed 310
Helix 69	AH6	D	415	425	Right-handed alpha
Helix 70	AH7	D	428	434	Right-handed alpha
Helix 71	AH8	D	442	448	Right-handed 310

There are 26 sheets in PDB entry 6N7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	128	131	parallel
Strand 3	A	122	125	anti-parallel
Strand 4	A	115	119	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	30	33	parallel
Strand 3	A	7	10	parallel
Strand 4	A	135	137	parallel
Strand 5	A	298	300	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	79	first strand
Strand 2	B	72	79	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	143	first strand
Strand 2	A	263	265	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	226	first strand
Strand 2	A	192	196	parallel
Strand 3	A	169	173	parallel
Strand 4	A	256	259	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	236	first strand
Strand 2	A	242	246	anti-parallel
Strand 3	A	251	254	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	343	first strand
Strand 2	A	349	353	anti-parallel
Strand 3	A	401	408	anti-parallel
Strand 4	A	388	396	anti-parallel
Strand 5	A	368	376	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	4	first strand
Strand 2	B	128	131	parallel
Strand 3	B	122	125	anti-parallel
Strand 4	B	116	119	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	111	first strand
Strand 2	B	30	33	parallel
Strand 3	B	7	10	parallel
Strand 4	B	135	137	parallel
Strand 5	B	298	300	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	143	first strand
Strand 2	B	263	265	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	226	first strand
Strand 2	B	192	196	parallel
Strand 3	B	169	173	parallel
Strand 4	B	256	259	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	236	first strand
Strand 2	B	242	246	anti-parallel
Strand 3	B	251	254	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	343	first strand
Strand 2	B	349	353	anti-parallel
Strand 3	B	401	408	anti-parallel
Strand 4	B	388	396	anti-parallel
Strand 5	B	368	376	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	4	first strand
Strand 2	C	128	131	parallel
Strand 3	C	122	125	anti-parallel
Strand 4	C	116	119	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	111	first strand
Strand 2	C	30	33	parallel
Strand 3	C	7	10	parallel
Strand 4	C	135	137	parallel
Strand 5	C	298	300	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	79	first strand
Strand 2	D	72	79	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	143	first strand
Strand 2	C	263	265	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	226	first strand
Strand 2	C	192	196	parallel
Strand 3	C	169	173	parallel
Strand 4	C	256	259	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	236	first strand
Strand 2	C	242	246	anti-parallel
Strand 3	C	251	254	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	343	first strand
Strand 2	C	349	353	anti-parallel
Strand 3	C	401	408	anti-parallel
Strand 4	C	388	396	anti-parallel
Strand 5	C	368	376	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	4	first strand
Strand 2	D	128	131	parallel
Strand 3	D	122	125	anti-parallel
Strand 4	D	115	119	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	111	first strand
Strand 2	D	30	33	parallel
Strand 3	D	7	10	parallel
Strand 4	D	135	137	parallel
Strand 5	D	298	300	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	143	first strand
Strand 2	D	263	265	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	226	first strand
Strand 2	D	192	196	parallel
Strand 3	D	169	173	parallel
Strand 4	D	256	259	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	236	first strand
Strand 2	D	242	246	anti-parallel
Strand 3	D	251	254	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	341	343	first strand
Strand 2	D	349	353	anti-parallel
Strand 3	D	401	408	anti-parallel
Strand 4	D	388	396	anti-parallel
Strand 5	D	368	376	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6N7F

Analysis of interatomic Contacts of Structural Units in PDB entry:
6N7F