Analysis of interatomic Contacts of Structural Units in PDB entry:
6N7R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6N7R entry

There are 18 chains in PDB entry 6N7R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 188
B	ARG 3	ASP 197
C	MET 1	ARG 148
D	MET 1	THR 541
E	ALA 43	GLU 627
F	MET 291	ALA 523
G	SER 44	SER 295
H	MET 1	UNK 1298
I	MET 4	ARG 244
K	ILE 4	LYS 132
L	MET 1	SER 119
M	SER 2	PRO 108
N	GLY 5	ILE 95
O	ALA 9	SER 92
P	PRO 12	PRO 85
Q	VAL 2	ILE 77
R	A 1	U 565
r	U -2	N 156

There are121 helices in PDB entry 6N7R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	16	Right-handed alpha
Helix 2	AA2	A	31	35	Right-handed 310
Helix 3	AA3	A	44	59	Right-handed alpha
Helix 4	AA4	A	65	91	Right-handed alpha
Helix 5	AA5	A	120	129	Right-handed alpha
Helix 6	AA6	A	157	171	Right-handed alpha
Helix 7	AA7	B	17	26	Right-handed alpha
Helix 8	AA8	B	27	48	Right-handed alpha
Helix 9	AA9	B	60	70	Right-handed alpha
Helix 10	AB1	B	79	99	Right-handed alpha
Helix 11	AB2	B	104	109	Right-handed alpha
Helix 12	AB3	B	114	118	Right-handed 310
Helix 13	AB4	B	127	134	Right-handed alpha
Helix 14	AB5	B	141	147	Right-handed alpha
Helix 15	AB6	B	182	184	Right-handed 310
Helix 16	AB7	C	15	28	Right-handed alpha
Helix 17	AB8	C	31	36	Right-handed alpha
Helix 18	AB9	C	83	95	Right-handed alpha
Helix 19	AC1	C	115	125	Right-handed alpha
Helix 20	AC2	C	134	148	Right-handed alpha
Helix 21	AC3	D	2	9	Right-handed alpha
Helix 22	AC4	D	10	23	Right-handed alpha
Helix 23	AC5	D	27	40	Right-handed alpha
Helix 24	AC6	D	49	67	Right-handed alpha
Helix 25	AC7	D	70	84	Right-handed alpha
Helix 26	AC8	D	86	101	Right-handed alpha
Helix 27	AC9	D	105	120	Right-handed alpha
Helix 28	AD1	D	122	138	Right-handed alpha
Helix 29	AD2	D	143	158	Right-handed alpha
Helix 30	AD3	D	161	172	Right-handed alpha
Helix 31	AD4	D	178	192	Right-handed alpha
Helix 32	AD5	D	198	203	Right-handed alpha
Helix 33	AD6	D	204	211	Right-handed alpha
Helix 34	AD7	D	222	255	Right-handed alpha
Helix 35	AD8	D	272	290	Right-handed alpha
Helix 36	AD9	D	291	303	Right-handed alpha
Helix 37	AE1	D	310	323	Right-handed alpha
Helix 38	AE2	D	326	341	Right-handed alpha
Helix 39	AE3	D	344	358	Right-handed alpha
Helix 40	AE4	D	360	375	Right-handed alpha
Helix 41	AE5	D	378	382	Right-handed 310
Helix 42	AE6	D	384	403	Right-handed alpha
Helix 43	AE7	D	407	411	Right-handed 310
Helix 44	AE8	D	417	429	Right-handed alpha
Helix 45	AE9	D	436	445	Right-handed alpha
Helix 46	AF1	D	449	460	Right-handed alpha
Helix 47	AF2	D	460	468	Right-handed alpha
Helix 48	AF3	D	469	474	Right-handed alpha
Helix 49	AF4	D	475	488	Right-handed alpha
Helix 50	AF5	D	493	504	Right-handed alpha
Helix 51	AF6	D	504	509	Right-handed alpha
Helix 52	AF7	D	513	529	Right-handed alpha
Helix 53	AF8	D	532	540	Right-handed alpha
Helix 54	AF9	E	44	62	Right-handed alpha
Helix 55	AG1	E	66	84	Right-handed alpha
Helix 56	AG2	E	87	101	Right-handed alpha
Helix 57	AG3	E	103	117	Right-handed alpha
Helix 58	AG4	E	121	134	Right-handed alpha
Helix 59	AG5	E	138	154	Right-handed alpha
Helix 60	AG6	E	160	174	Right-handed alpha
Helix 61	AG7	E	176	189	Right-handed alpha
Helix 62	AG8	E	194	206	Right-handed alpha
Helix 63	AG9	E	213	240	Right-handed alpha
Helix 64	AH1	E	247	252	Right-handed alpha
Helix 65	AH2	E	252	265	Right-handed alpha
Helix 66	AH3	E	269	284	Right-handed alpha
Helix 67	AH4	E	289	304	Right-handed alpha
Helix 68	AH5	E	306	321	Right-handed alpha
Helix 69	AH6	E	327	344	Right-handed alpha
Helix 70	AH7	E	345	362	Right-handed alpha
Helix 71	AH8	E	366	380	Right-handed alpha
Helix 72	AH9	E	388	412	Right-handed alpha
Helix 73	AI1	E	419	425	Right-handed alpha
Helix 74	AI2	E	429	444	Right-handed alpha
Helix 75	AI3	E	447	459	Right-handed alpha
Helix 76	AI4	E	461	466	Right-handed alpha
Helix 77	AI5	E	467	481	Right-handed alpha
Helix 78	AI6	E	484	497	Right-handed alpha
Helix 79	AI7	E	501	520	Right-handed alpha
Helix 80	AI8	E	521	529	Right-handed alpha
Helix 81	AI9	E	539	544	Right-handed alpha
Helix 82	AJ1	E	565	570	Right-handed alpha
Helix 83	AJ2	E	591	596	Right-handed alpha
Helix 84	AJ3	E	618	624	Right-handed alpha
Helix 85	AJ4	F	325	334	Right-handed alpha
Helix 86	AJ5	F	335	337	Right-handed 310
Helix 87	AJ6	F	357	368	Right-handed alpha
Helix 88	AJ7	F	386	398	Right-handed alpha
Helix 89	AJ8	F	500	519	Right-handed alpha
Helix 90	AJ9	G	46	58	Right-handed alpha
Helix 91	AK1	G	78	94	Right-handed alpha
Helix 92	AK2	G	121	139	Right-handed alpha
Helix 93	AK3	G	208	220	Right-handed alpha
Helix 94	AK4	G	230	252	Right-handed alpha
Helix 95	AK5	G	262	293	Right-handed alpha
Helix 96	AK6	H	8	14	Right-handed alpha
Helix 97	AK7	H	35	43	Right-handed alpha
Helix 98	AK8	H	43	52	Right-handed alpha
Helix 99	AK9	H	1274	1276	Right-handed 310
Helix 100	AL1	H	1277	1298	Right-handed alpha
Helix 101	AL2	I	6	19	Right-handed alpha
Helix 102	AL3	I	46	51	Right-handed alpha
Helix 103	AL4	I	53	58	Right-handed alpha
Helix 104	AL5	I	74	87	Right-handed alpha
Helix 105	AL6	I	91	121	Right-handed alpha
Helix 106	AL7	I	213	222	Right-handed alpha
Helix 107	AL8	I	223	244	Right-handed alpha
Helix 108	AL9	K	57	61	Right-handed 310
Helix 109	AM1	K	104	132	Right-handed alpha
Helix 110	AM2	L	2	8	Right-handed alpha
Helix 111	AM3	L	59	69	Right-handed alpha
Helix 112	AM4	L	102	107	Right-handed alpha
Helix 113	AM5	L	109	119	Right-handed alpha
Helix 114	AM6	M	3	8	Right-handed alpha
Helix 115	AM7	M	14	28	Right-handed alpha
Helix 116	AM8	M	31	40	Right-handed alpha
Helix 117	AM9	N	6	14	Right-handed alpha
Helix 118	AN1	N	65	67	Right-handed 310
Helix 119	AN2	N	75	85	Right-handed 310
Helix 120	AN3	O	12	24	Right-handed alpha
Helix 121	AN4	P	14	22	Right-handed alpha

There are 15 sheets in PDB entry 6N7R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	140	first strand
Strand 2	A	147	155	anti-parallel
Strand 3	A	108	112	anti-parallel
Strand 4	A	180	185	anti-parallel
Strand 5	A	174	175	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	11	13	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	180	first strand
Strand 2	F	294	295	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	66	first strand
Strand 2	C	77	81	anti-parallel
Strand 3	C	3	6	anti-parallel
Strand 4	C	108	110	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	101	first strand
Strand 2	C	104	105	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	576	577	first strand
Strand 2	E	615	616	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	339	343	first strand
Strand 2	F	350	355	anti-parallel
Strand 3	F	314	318	anti-parallel
Strand 4	F	379	382	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	372	373	first strand
Strand 2	F	376	377	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	445	446	first strand
Strand 2	F	494	495	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	69	75	first strand
Strand 2	G	112	118	anti-parallel
Strand 3	G	98	103	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	157	164	first strand
Strand 2	G	198	206	anti-parallel
Strand 3	G	187	189	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	21	first strand
Strand 2	H	4	7	anti-parallel
Strand 3	H	29	32	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	199	201	first strand
Strand 2	I	206	208	anti-parallel

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There are 28 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	78	81	first strand
Strand 2	K	49	52	anti-parallel
Strand 3	K	28	36	anti-parallel
Strand 4	K	19	24	anti-parallel
Strand 5	K	92	99	anti-parallel
Strand 6	L	79	87	anti-parallel
Strand 7	L	38	46	anti-parallel
Strand 8	L	24	32	anti-parallel
Strand 9	L	14	19	anti-parallel
Strand 10	L	92	96	anti-parallel
Strand 11	M	83	96	anti-parallel
Strand 12	M	67	80	anti-parallel
Strand 13	M	53	60	anti-parallel
Strand 14	M	44	48	anti-parallel
Strand 15	M	101	106	anti-parallel
Strand 16	P	64	73	anti-parallel
Strand 17	P	51	59	anti-parallel
Strand 18	P	37	45	anti-parallel
Strand 19	P	26	31	anti-parallel
Strand 20	P	78	83	anti-parallel
Strand 21	O	76	82	anti-parallel
Strand 22	O	52	61	anti-parallel
Strand 23	O	37	46	anti-parallel
Strand 24	O	27	31	anti-parallel
Strand 25	O	87	91	anti-parallel
Strand 26	Q	60	63	anti-parallel
Strand 27	Q	38	45	anti-parallel
Strand 28	Q	55	56	anti-parallel

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There are 15 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	78	81	first strand
Strand 2	K	49	52	anti-parallel
Strand 3	K	28	36	anti-parallel
Strand 4	K	44	45	anti-parallel
Strand 5	K	85	87	anti-parallel
Strand 6	N	69	73	anti-parallel
Strand 7	N	18	23	anti-parallel
Strand 8	N	28	36	anti-parallel
Strand 9	N	42	50	anti-parallel
Strand 10	N	56	64	anti-parallel
Strand 11	Q	68	73	anti-parallel
Strand 12	Q	14	19	anti-parallel
Strand 13	Q	25	32	anti-parallel
Strand 14	Q	38	45	anti-parallel
Strand 15	Q	55	56	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6N7R

Analysis of interatomic Contacts of Structural Units in PDB entry:
6N7R