Analysis of interatomic Contacts of Structural Units in PDB entry:
6N7T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6N7T entry

There are 7 chains in PDB entry 6N7T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 264GLY 549
B
 GLY 264GLY 549
C
 ASP 263TYR 547
D
 ASP 263GLY 549
E
 GLY 264SER 545
F
 GLY 264GLY 549
T
 T 5 T 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 58 helices in PDB entry 6N7T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
269 272Right-handed 310
Helix 2
AA2
A
273 279Right-handed alpha
Helix 3
AA3
A
292 298Right-handed alpha
Helix 4
AA4
A
317 332Right-handed alpha
Helix 5
AA5
A
345 356Right-handed alpha
Helix 6
AA6
A
365 375Right-handed alpha
Helix 7
AA7
A
377 383Right-handed alpha
Helix 8
AA8
A
403 415Right-handed alpha
Helix 9
AA9
A
425 429Right-handed 310
Helix 10
AB1
A
439 454Right-handed alpha
Helix 11
AB2
A
482 486Right-handed 310
Helix 12
AB3
B
273 280Right-handed alpha
Helix 13
AB4
B
292 298Right-handed alpha
Helix 14
AB5
B
317 332Right-handed alpha
Helix 15
AB6
B
345 358Right-handed alpha
Helix 16
AB7
B
365 375Right-handed alpha
Helix 17
AB8
B
376 386Right-handed alpha
Helix 18
AB9
B
403 414Right-handed alpha
Helix 19
AC1
B
438 454Right-handed alpha
Helix 20
AC2
B
474 478Right-handed 310
Helix 21
AC3
B
482 486Right-handed 310
Helix 22
AC4
C
271 277Right-handed alpha
Helix 23
AC5
C
293 299Right-handed alpha
Helix 24
AC6
C
319 329Right-handed alpha
Helix 25
AC7
C
348 358Right-handed alpha
Helix 26
AC8
C
365 375Right-handed alpha
Helix 27
AC9
C
376 386Right-handed alpha
Helix 28
AD1
C
402 415Right-handed alpha
Helix 29
AD2
C
426 432Right-handed alpha
Helix 30
AD3
C
438 457Right-handed alpha
Helix 31
AD4
C
474 478Right-handed 310
Helix 32
AD5
C
482 486Right-handed 310
Helix 33
AD6
D
271 277Right-handed alpha
Helix 34
AD7
D
294 299Right-handed alpha
Helix 35
AD8
D
317 332Right-handed alpha
Helix 36
AD9
D
345 358Right-handed alpha
Helix 37
AE1
D
370 375Right-handed alpha
Helix 38
AE2
D
377 387Right-handed alpha
Helix 39
AE3
D
403 415Right-handed alpha
Helix 40
AE4
D
440 457Right-handed alpha
Helix 41
AE5
D
474 478Right-handed 310
Helix 42
AE6
D
490 494Right-handed 310
Helix 43
AE7
E
272 280Right-handed alpha
Helix 44
AE8
E
317 329Right-handed alpha
Helix 45
AE9
E
345 358Right-handed alpha
Helix 46
AF1
E
365 372Right-handed alpha
Helix 47
AF2
E
378 387Right-handed alpha
Helix 48
AF3
E
405 415Right-handed alpha
Helix 49
AF4
E
440 457Right-handed alpha
Helix 50
AF5
E
474 478Right-handed 310
Helix 51
AF6
F
273 279Right-handed alpha
Helix 52
AF7
F
293 299Right-handed alpha
Helix 53
AF8
F
317 331Right-handed alpha
Helix 54
AF9
F
345 358Right-handed alpha
Helix 55
AG1
F
365 375Right-handed alpha
Helix 56
AG2
F
410 415Right-handed alpha
Helix 57
AG3
F
439 454Right-handed alpha
Helix 58
AG4
F
491 496Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6N7T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 267first strand
Strand 2
B
391 394anti-parallel
Strand 3
B
337 340parallel
Strand 4
B
420 423parallel
Strand 5
B
459 463parallel
Strand 6
B
306 311parallel
Strand 7
B
498 503parallel
Strand 8
B
513 521anti-parallel
Strand 9
B
528 534anti-parallel
Strand 10
B
543 544anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
542 544first strand
Strand 2
A
528 535anti-parallel
Strand 3
A
513 521anti-parallel
Strand 4
A
498 503anti-parallel
Strand 5
A
306 311parallel
Strand 6
A
459 463parallel
Strand 7
A
420 423parallel
Strand 8
A
337 338parallel
Strand 9
A
391 394parallel
Strand 10
F
265 267anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 267first strand
Strand 2
C
391 393anti-parallel
Strand 3
C
337 340parallel
Strand 4
C
420 423parallel
Strand 5
C
459 463parallel
Strand 6
C
307 311parallel
Strand 7
C
498 503parallel
Strand 8
C
513 521anti-parallel
Strand 9
C
528 535anti-parallel
Strand 10
C
542 544anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
265 267first strand
Strand 2
E
391 394anti-parallel
Strand 3
E
336 338parallel
Strand 4
E
418 423parallel
Strand 5
E
459 462parallel
Strand 6
E
307 310parallel
Strand 7
E
498 503parallel
Strand 8
E
514 521anti-parallel
Strand 9
E
528 533anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
391 392first strand
Strand 2
D
337 340parallel
Strand 3
D
420 423parallel
Strand 4
D
459 463parallel
Strand 5
D
306 311parallel
Strand 6
D
498 503parallel
Strand 7
D
514 521anti-parallel
Strand 8
D
528 534anti-parallel
Strand 9
D
543 544anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
338 340first strand
Strand 2
F
420 423parallel
Strand 3
F
459 463parallel
Strand 4
F
306 311parallel
Strand 5
F
498 504parallel
Strand 6
F
513 521anti-parallel
Strand 7
F
529 536anti-parallel
Strand 8
F
541 545anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il