Analysis of interatomic Contacts of Structural Units in PDB entry:
6N7W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6N7W entry

There are 4 chains in PDB entry 6N7W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	MET 1	HIS 704
I	ASP 2	LEU 107
P	G 1	G 24
T	A 30	C 77

There are 34 helices in PDB entry 6N7W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	35	37	Right-handed 310
Helix 2	AA2	H	38	52	Right-handed alpha
Helix 3	AA3	H	64	78	Right-handed alpha
Helix 4	AA4	H	91	99	Right-handed alpha
Helix 5	AA5	H	124	132	Right-handed alpha
Helix 6	AA6	H	138	151	Right-handed alpha
Helix 7	AA7	H	157	161	Right-handed 310
Helix 8	AA8	H	164	186	Right-handed alpha
Helix 9	AA9	H	197	201	Right-handed 310
Helix 10	AB1	H	202	209	Right-handed alpha
Helix 11	AB2	H	211	231	Right-handed alpha
Helix 12	AB3	H	235	261	Right-handed alpha
Helix 13	AB4	H	303	308	Right-handed alpha
Helix 14	AB5	H	338	350	Right-handed alpha
Helix 15	AB6	H	365	372	Right-handed alpha
Helix 16	AB7	H	376	400	Right-handed alpha
Helix 17	AB8	H	405	410	Right-handed alpha
Helix 18	AB9	H	436	440	Right-handed 310
Helix 19	AC1	H	447	454	Right-handed alpha
Helix 20	AC2	H	456	460	Right-handed 310
Helix 21	AC3	H	478	493	Right-handed alpha
Helix 22	AC4	H	494	500	Right-handed alpha
Helix 23	AC5	H	504	514	Right-handed alpha
Helix 24	AC6	H	517	530	Right-handed alpha
Helix 25	AC7	H	533	542	Right-handed alpha
Helix 26	AC8	H	544	559	Right-handed alpha
Helix 27	AC9	H	560	574	Right-handed alpha
Helix 28	AD1	H	608	636	Right-handed alpha
Helix 29	AD2	H	662	684	Right-handed alpha
Helix 30	AD3	H	699	704	Right-handed alpha
Helix 31	AD4	I	8	16	Right-handed alpha
Helix 32	AD5	I	34	49	Right-handed alpha
Helix 33	AD6	I	65	71	Right-handed alpha
Helix 34	AD7	I	95	105	Right-handed alpha

There are 8 sheets in PDB entry 6N7W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	31	32	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	2	8	anti-parallel
Strand 4	H	56	58	parallel
Strand 5	H	88	90	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	264	266	first strand
Strand 2	H	330	332	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	327	328	first strand
Strand 2	I	74	75	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	420	421	first strand
Strand 2	H	431	432	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	648	650	first strand
Strand 2	H	655	660	anti-parallel
Strand 3	H	470	476	anti-parallel
Strand 4	H	692	697	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	576	577	first strand
Strand 2	H	586	587	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	592	594	first strand
Strand 2	H	600	602	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	6	first strand
Strand 2	I	54	59	parallel
Strand 3	I	23	28	parallel
Strand 4	I	77	82	anti-parallel
Strand 5	I	85	91	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6N7W

Analysis of interatomic Contacts of Structural Units in PDB entry:
6N7W