Analysis of interatomic Contacts of Structural Units in PDB entry:
6N85

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6N85 entry

There are 2 chains in PDB entry 6N85 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	ALA 426
M	ILE 3	PHE 395

There are 46 helices in PDB entry 6N85. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	2	12	Right-handed alpha
Helix 2	AA2	B	14	29	Right-handed alpha
Helix 3	AA3	B	39	57	Right-handed alpha
Helix 4	AA4	B	59	61	Right-handed 310
Helix 5	AA5	B	62	74	Right-handed alpha
Helix 6	AA6	B	76	84	Right-handed alpha
Helix 7	AA7	B	85	96	Right-handed alpha
Helix 8	AA8	B	110	128	Right-handed alpha
Helix 9	AA9	B	128	139	Right-handed alpha
Helix 10	AB1	B	140	149	Right-handed alpha
Helix 11	AB2	B	150	154	Right-handed 310
Helix 12	AB3	B	157	175	Right-handed alpha
Helix 13	AB4	B	175	184	Right-handed alpha
Helix 14	AB5	B	187	201	Right-handed alpha
Helix 15	AB6	B	213	232	Right-handed alpha
Helix 16	AB7	B	240	260	Right-handed alpha
Helix 17	AB8	B	266	279	Right-handed alpha
Helix 18	AB9	B	280	281	Right-handed 310
Helix 19	AC1	B	282	290	Right-handed 310
Helix 20	AC2	B	306	320	Right-handed alpha
Helix 21	AC3	B	325	344	Right-handed alpha
Helix 22	AC4	B	344	356	Right-handed alpha
Helix 23	AC5	B	371	379	Right-handed alpha
Helix 24	AC6	B	380	382	Right-handed 310
Helix 25	AC7	B	384	399	Right-handed alpha
Helix 26	AC8	B	402	411	Right-handed alpha
Helix 27	AC9	B	411	422	Right-handed alpha
Helix 28	AD1	M	17	33	Right-handed alpha
Helix 29	AD2	M	43	53	Right-handed alpha
Helix 30	AD3	M	67	74	Right-handed alpha
Helix 31	AD4	M	83	88	Right-handed alpha
Helix 32	AD5	M	91	98	Right-handed alpha
Helix 33	AD6	M	132	141	Right-handed alpha
Helix 34	AD7	M	142	144	Right-handed 310
Helix 35	AD8	M	154	164	Right-handed alpha
Helix 36	AD9	M	186	202	Right-handed alpha
Helix 37	AE1	M	210	220	Right-handed alpha
Helix 38	AE2	M	229	231	Right-handed 310
Helix 39	AE3	M	232	239	Right-handed alpha
Helix 40	AE4	M	273	284	Right-handed alpha
Helix 41	AE5	M	287	298	Right-handed alpha
Helix 42	AE6	M	305	313	Right-handed alpha
Helix 43	AE7	M	315	327	Right-handed alpha
Helix 44	AE8	M	336	353	Right-handed alpha
Helix 45	AE9	M	357	371	Right-handed alpha
Helix 46	AF1	M	379	391	Right-handed alpha

There are 7 sheets in PDB entry 6N85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	212	first strand
Strand 2	B	261	262	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	36	39	first strand
Strand 2	M	8	11	parallel
Strand 3	M	60	64	parallel
Strand 4	M	259	267	anti-parallel
Strand 5	M	106	112	anti-parallel
Strand 6	M	302	303	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	36	39	first strand
Strand 2	M	8	11	parallel
Strand 3	M	60	64	parallel
Strand 4	M	259	267	anti-parallel
Strand 5	M	329	330	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	99	100	first strand
Strand 2	M	103	104	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	146	148	first strand
Strand 2	M	223	228	parallel
Strand 3	M	115	119	anti-parallel
Strand 4	M	243	246	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	168	173	first strand
Strand 2	M	176	183	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	250	251	first strand
Strand 2	M	254	255	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6N85

Analysis of interatomic Contacts of Structural Units in PDB entry:
6N85