Analysis of interatomic Contacts of Structural Units in PDB entry:
6N88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6N88 entry

There are 3 chains in PDB entry 6N88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 283LEU 998
B
 MET 1LYS 873
C
 ASP 24LYS 97
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 6N88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
292 310Right-handed alpha
Helix 2
AA2
A
319 321Right-handed 310
Helix 3
AA3
A
322 341Right-handed alpha
Helix 4
AA4
A
343 367Right-handed alpha
Helix 5
AA5
A
382 404Right-handed alpha
Helix 6
AA6
A
409 421Right-handed alpha
Helix 7
AA7
A
428 448Right-handed alpha
Helix 8
AA8
A
457 465Right-handed alpha
Helix 9
AA9
A
471 483Right-handed alpha
Helix 10
AB1
A
492 507Right-handed alpha
Helix 11
AB2
A
510 527Right-handed alpha
Helix 12
AB3
A
534 553Right-handed alpha
Helix 13
AB4
A
555 571Right-handed alpha
Helix 14
AB5
A
573 601Right-handed alpha
Helix 15
AB6
A
604 621Right-handed alpha
Helix 16
AB7
A
628 647Right-handed alpha
Helix 17
AB8
A
653 662Right-handed alpha
Helix 18
AB9
A
668 689Right-handed alpha
Helix 19
AC1
A
689 708Right-handed alpha
Helix 20
AC2
A
714 727Right-handed alpha
Helix 21
AC3
A
728 732Right-handed 310
Helix 22
AC4
A
735 751Right-handed alpha
Helix 23
AC5
A
752 754Right-handed 310
Helix 24
AC6
A
756 774Right-handed alpha
Helix 25
AC7
A
778 792Right-handed alpha
Helix 26
AC8
A
793 799Right-handed alpha
Helix 27
AC9
A
799 804Right-handed alpha
Helix 28
AD1
A
810 827Right-handed alpha
Helix 29
AD2
A
828 832Right-handed 310
Helix 30
AD3
A
834 848Right-handed alpha
Helix 31
AD4
A
850 870Right-handed alpha
Helix 32
AD5
A
959 973Right-handed alpha
Helix 33
AD6
A
974 980Right-handed alpha
Helix 34
AD7
A
981 997Right-handed alpha
Helix 35
AD8
B
4 10Right-handed alpha
Helix 36
AD9
B
16 36Right-handed alpha
Helix 37
AE1
B
36 46Right-handed alpha
Helix 38
AE2
B
54 63Right-handed alpha
Helix 39
AE3
B
69 74Right-handed alpha
Helix 40
AE4
B
75 83Right-handed alpha
Helix 41
AE5
B
87 102Right-handed alpha
Helix 42
AE6
B
107 121Right-handed alpha
Helix 43
AE7
B
129 138Right-handed alpha
Helix 44
AE8
B
143 150Right-handed alpha
Helix 45
AE9
B
151 160Right-handed alpha
Helix 46
AF1
B
167 183Right-handed alpha
Helix 47
AF2
B
187 203Right-handed alpha
Helix 48
AF3
B
212 228Right-handed alpha
Helix 49
AF4
B
231 248Right-handed alpha
Helix 50
AF5
B
257 270Right-handed alpha
Helix 51
AF6
B
277 301Right-handed alpha
Helix 52
AF7
B
318 323Right-handed alpha
Helix 53
AF8
B
324 330Right-handed alpha
Helix 54
AF9
B
343 358Right-handed alpha
Helix 55
AG1
B
362 377Right-handed alpha
Helix 56
AG2
B
379 394Right-handed alpha
Helix 57
AG3
B
398 415Right-handed alpha
Helix 58
AG4
B
421 439Right-handed alpha
Helix 59
AG5
B
444 458Right-handed alpha
Helix 60
AG6
B
467 486Right-handed alpha
Helix 61
AG7
B
495 515Right-handed alpha
Helix 62
AG8
B
524 538Right-handed alpha
Helix 63
AG9
B
543 567Right-handed alpha
Helix 64
AH1
B
571 593Right-handed alpha
Helix 65
AH2
B
596 622Right-handed alpha
Helix 66
AH3
B
624 637Right-handed alpha
Helix 67
AH4
B
642 660Right-handed alpha
Helix 68
AH5
B
666 681Right-handed alpha
Helix 69
AH6
B
687 706Right-handed alpha
Helix 70
AH7
B
710 722Right-handed alpha
Helix 71
AH8
B
728 745Right-handed alpha
Helix 72
AH9
B
757 776Right-handed alpha
Helix 73
AI1
B
786 795Right-handed alpha
Helix 74
AI2
B
795 807Right-handed alpha
Helix 75
AI3
B
811 830Right-handed alpha
Helix 76
AI4
B
833 839Right-handed alpha
Helix 77
AI5
B
839 852Right-handed alpha
Helix 78
AI6
B
858 871Right-handed alpha
Helix 79
AI7
C
27 39Right-handed alpha
Helix 80
AI8
C
46 58Right-handed alpha
Helix 81
AI9
C
63 78Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6N88.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 87first strand
Strand 2
C
90 95anti-parallel
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