Analysis of interatomic Contacts of Structural Units in PDB entry:
6N8D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6N8D entry

There are 6 chains in PDB entry 6N8D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LYS 225	MET 530
E	GLU 1	ARG 211
F	GLN 1	GLU 212
A	LYS 225	MET 530
B	GLU 1	ARG 211
D	GLN 1	ILE 51

There are 16 helices in PDB entry 6N8D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	359	362	Right-handed 310
Helix 2	AA2	C	454	465	Right-handed alpha
Helix 3	AA3	E	79	83	Right-handed 310
Helix 4	AA4	E	182	187	Right-handed alpha
Helix 5	AA5	F	28	32	Right-handed 310
Helix 6	AA6	F	83	87	Right-handed 310
Helix 7	AA7	F	99	100	Right-handed 310
Helix 8	AA8	F	156	158	Right-handed 310
Helix 9	AA9	F	185	189	Right-handed 310
Helix 10	AB1	A	454	465	Right-handed alpha
Helix 11	AB2	B	79	83	Right-handed 310
Helix 12	AB3	B	182	187	Right-handed alpha
Helix 13	AB4	D	28	32	Right-handed 310
Helix 14	AB5	D	83	87	Right-handed 310
Helix 15	AB6	D	99	100	Right-handed 310
Helix 16	AB7	D	185	189	Right-handed 310

There are 23 sheets in PDB entry 6N8D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	448	451	first strand
Strand 2	C	429	437	anti-parallel
Strand 3	C	248	252	anti-parallel
Strand 4	C	505	506	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	448	451	first strand
Strand 2	C	429	437	anti-parallel
Strand 3	C	496	500	anti-parallel
Strand 4	C	485	492	anti-parallel
Strand 5	C	472	478	anti-parallel
Strand 6	C	514	521	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	442	first strand
Strand 2	C	380	389	parallel
Strand 3	C	329	337	anti-parallel
Strand 4	C	344	352	anti-parallel
Strand 5	C	364	369	anti-parallel
Strand 6	C	298	303	anti-parallel
Strand 7	C	286	289	anti-parallel
Strand 8	C	380	389	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	67	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	33	38	anti-parallel
Strand 5	E	45	49	anti-parallel
Strand 6	E	53	54	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	97	98	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	118	first strand
Strand 2	E	130	139	anti-parallel
Strand 3	E	173	181	anti-parallel
Strand 4	E	160	163	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	145	150	first strand
Strand 2	E	191	197	anti-parallel
Strand 3	E	208	210	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	8	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	107	111	parallel
Strand 3	F	88	94	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	57	59	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	123	first strand
Strand 2	F	136	145	anti-parallel
Strand 3	F	176	184	anti-parallel
Strand 4	F	164	169	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	151	154	first strand
Strand 2	F	195	200	anti-parallel
Strand 3	F	205	210	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	451	first strand
Strand 2	A	429	437	anti-parallel
Strand 3	A	248	252	anti-parallel
Strand 4	A	505	506	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	451	first strand
Strand 2	A	429	437	anti-parallel
Strand 3	A	496	500	anti-parallel
Strand 4	A	485	492	anti-parallel
Strand 5	A	472	478	anti-parallel
Strand 6	A	514	521	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	442	first strand
Strand 2	A	381	389	parallel
Strand 3	A	329	338	anti-parallel
Strand 4	A	343	352	anti-parallel
Strand 5	A	364	369	anti-parallel
Strand 6	A	298	303	anti-parallel
Strand 7	A	286	292	anti-parallel
Strand 8	A	381	389	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	62	67	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	102	106	parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	33	38	anti-parallel
Strand 5	B	45	49	anti-parallel
Strand 6	B	53	54	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	102	106	parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	97	98	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	150	first strand
Strand 2	B	192	195	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	163	first strand
Strand 2	B	175	178	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	17	25	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	88	94	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	121	first strand
Strand 2	D	141	145	anti-parallel
Strand 3	D	176	179	anti-parallel
Strand 4	D	166	169	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6N8D

Analysis of interatomic Contacts of Structural Units in PDB entry:
6N8D