Analysis of interatomic Contacts of Structural Units in PDB entry:
6N8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6N8E entry

There is 1 chain in PDB entry 6N8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4PRO 683
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 53 helices in PDB entry 6N8E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 26Right-handed alpha
Helix 2
AA2
A
45 60Right-handed alpha
Helix 3
AA3
A
61 63Right-handed 310
Helix 4
AA4
A
100 113Right-handed alpha
Helix 5
AA5
A
148 168Right-handed alpha
Helix 6
AA6
A
180 193Right-handed alpha
Helix 7
AA7
A
193 207Right-handed alpha
Helix 8
AA8
A
235 250Right-handed alpha
Helix 9
AA9
A
252 270Right-handed alpha
Helix 10
AB1
A
286 291Right-handed 310
Helix 11
AB2
A
310 329Right-handed alpha
Helix 12
AB3
A
332 340Right-handed alpha
Helix 13
AB4
A
408 427Right-handed alpha
Helix 14
AB5
A
433 437Right-handed 310
Helix 15
AB6
A
441 445Right-handed 310
Helix 16
AB7
A
461 473Right-handed alpha
Helix 17
AB8
A
488 506Right-handed alpha
Helix 18
AB9
A
521 534Right-handed alpha
Helix 19
AC1
A
546 558Right-handed alpha
Helix 20
AC2
A
567 572Right-handed 310
Helix 21
AC3
A
584 593Right-handed alpha
Helix 22
AC4
A
598 603Right-handed 310
Helix 23
AC5
A
631 646Right-handed alpha
Helix 24
AC6
A
662 673Right-handed alpha
Helix 25
AC7
A
682 687Right-handed alpha
Helix 26
AC8
A
688 699Right-handed alpha
Helix 27
AC9
A
707 721Right-handed alpha
Helix 28
AD1
A
721 726Right-handed alpha
Helix 29
AD2
A
741 744Right-handed 310
Helix 30
AD3
A
745 753Right-handed alpha
Helix 31
AD4
A
765 769Right-handed 310
Helix 32
AD5
A
780 785Right-handed alpha
Helix 33
AD6
A
831 838Right-handed alpha
Helix 34
AD7
A
873 875Right-handed 310
Helix 35
AD8
A
884 892Right-handed alpha
Helix 36
AD9
A
930 938Right-handed alpha
Helix 37
AE1
A
984 999Right-handed alpha
Helix 38
AE2
A
1017 1026Right-handed alpha
Helix 39
AE3
A
1029 1036Right-handed alpha
Helix 40
AE4
A
1038 1048Right-handed alpha
Helix 41
AE5
A
1084 1087Right-handed 310
Helix 42
AE6
A
1088 1093Right-handed alpha
Helix 43
AE7
A
1120 1136Right-handed alpha
Helix 44
AE8
A
1147 1161Right-handed alpha
Helix 45
AE9
A
1179 1188Right-handed alpha
Helix 46
AF1
A
1191 1202Right-handed alpha
Helix 47
AF2
A
1210 1235Right-handed alpha
Helix 48
AF3
A
1259 1264Right-handed alpha
Helix 49
AF4
A
1265 1271Right-handed 310
Helix 50
AF5
A
1285 1290Right-handed alpha
Helix 51
AF6
A
1290 1303Right-handed alpha
Helix 52
AF7
A
1321 1325Right-handed 310
Helix 53
AF8
A
1361 1367Right-handed alpha
Back to top of page

There are 13 sheets in PDB entry 6N8E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
78 82anti-parallel
Strand 3
A
65 69anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 94first strand
Strand 2
A
126 131parallel
Strand 3
A
136 143anti-parallel
Strand 4
A
33 40anti-parallel
Strand 5
A
368 376anti-parallel
Strand 6
A
363 365anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 233first strand
Strand 2
A
396 402anti-parallel
Strand 3
A
383 389anti-parallel
Strand 4
A
353 354parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 280first strand
Strand 2
A
297 304anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 487first strand
Strand 2
A
477 481anti-parallel
Strand 3
A
677 680parallel
Strand 4
A
652 655parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 541first strand
Strand 2
A
513 517parallel
Strand 3
A
561 564parallel
Strand 4
A
579 581parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
611 616first strand
Strand 2
A
626 630anti-parallel
Strand 3
A
827 828anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
703 706first strand
Strand 2
A
732 735parallel
Strand 3
A
760 761parallel
Strand 4
A
773 776anti-parallel
Strand 5
A
789 793anti-parallel
Strand 6
A
866 871anti-parallel
Strand 7
A
850 860anti-parallel
Strand 8
A
814 821anti-parallel
Strand 9
A
797 802anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
703 706first strand
Strand 2
A
732 735parallel
Strand 3
A
760 761parallel
Strand 4
A
773 776anti-parallel
Strand 5
A
789 793anti-parallel
Strand 6
A
866 871anti-parallel
Strand 7
A
850 860anti-parallel
Strand 8
A
839 841anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
876 877first strand
Strand 2
A
882 883anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
900 906first strand
Strand 2
A
914 920anti-parallel
Strand 3
A
948 951parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1062 1066first strand
Strand 2
A
1099 1104anti-parallel
Strand 3
A
1073 1078parallel
Strand 4
A
1140 1145parallel
Strand 5
A
1168 1172parallel
Strand 6
A
1246 1251parallel
Strand 7
A
1274 1279parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1340 1344first strand
Strand 2
A
1330 1334anti-parallel
Strand 3
A
1354 1360anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il