Analysis of interatomic Contacts of Structural Units in PDB entry:
6N9G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6N9G entry

There are 4 chains in PDB entry 6N9G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 18	ALA 450
B	SER 18	ALA 450
C	THR 3	ALA 353
D	ALA 2	GLN 83

There are 53 helices in PDB entry 6N9G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	35	Right-handed alpha
Helix 2	AA2	A	59	70	Right-handed alpha
Helix 3	AA3	A	74	89	Right-handed alpha
Helix 4	AA4	A	112	116	Right-handed 310
Helix 5	AA5	A	124	136	Right-handed alpha
Helix 6	AA6	A	137	142	Right-handed alpha
Helix 7	AA7	A	146	160	Right-handed alpha
Helix 8	AA8	A	163	180	Right-handed alpha
Helix 9	AA9	A	182	201	Right-handed alpha
Helix 10	AB1	A	255	271	Right-handed alpha
Helix 11	AB2	A	275	291	Right-handed alpha
Helix 12	AB3	A	292	294	Right-handed 310
Helix 13	AB4	A	304	309	Right-handed alpha
Helix 14	AB5	A	311	318	Right-handed alpha
Helix 15	AB6	A	323	331	Right-handed alpha
Helix 16	AB7	A	333	340	Right-handed alpha
Helix 17	AB8	A	340	354	Right-handed alpha
Helix 18	AB9	A	357	370	Right-handed alpha
Helix 19	AC1	A	376	389	Right-handed alpha
Helix 20	AC2	A	400	412	Right-handed alpha
Helix 21	AC3	A	419	433	Right-handed alpha
Helix 22	AC4	A	433	440	Right-handed alpha
Helix 23	AC5	A	441	449	Right-handed alpha
Helix 24	AC6	B	19	35	Right-handed alpha
Helix 25	AC7	B	59	70	Right-handed alpha
Helix 26	AC8	B	74	89	Right-handed alpha
Helix 27	AC9	B	112	116	Right-handed 310
Helix 28	AD1	B	124	138	Right-handed alpha
Helix 29	AD2	B	146	160	Right-handed alpha
Helix 30	AD3	B	163	180	Right-handed alpha
Helix 31	AD4	B	182	201	Right-handed alpha
Helix 32	AD5	B	256	270	Right-handed alpha
Helix 33	AD6	B	275	291	Right-handed alpha
Helix 34	AD7	B	292	294	Right-handed 310
Helix 35	AD8	B	304	309	Right-handed alpha
Helix 36	AD9	B	311	318	Right-handed alpha
Helix 37	AE1	B	323	331	Right-handed alpha
Helix 38	AE2	B	333	340	Right-handed alpha
Helix 39	AE3	B	340	354	Right-handed alpha
Helix 40	AE4	B	357	370	Right-handed alpha
Helix 41	AE5	B	376	389	Right-handed alpha
Helix 42	AE6	B	400	412	Right-handed alpha
Helix 43	AE7	B	419	433	Right-handed alpha
Helix 44	AE8	B	433	440	Right-handed alpha
Helix 45	AE9	B	441	450	Right-handed alpha
Helix 46	AF1	C	9	34	Right-handed alpha
Helix 47	AF2	C	37	42	Right-handed alpha
Helix 48	AF3	C	43	45	Right-handed 310
Helix 49	AF4	C	142	146	Right-handed 310
Helix 50	AF5	D	8	34	Right-handed alpha
Helix 51	AF6	D	37	42	Right-handed alpha
Helix 52	AF7	D	43	45	Right-handed 310
Helix 53	AF8	D	142	146	Right-handed 310

There are 16 sheets in PDB entry 6N9G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	47	first strand
Strand 2	A	52	58	anti-parallel
Strand 3	A	107	110	anti-parallel
Strand 4	A	91	93	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	58	first strand
Strand 2	B	107	110	anti-parallel
Strand 3	B	91	93	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	60	first strand
Strand 2	C	348	353	anti-parallel
Strand 3	C	340	344	anti-parallel
Strand 4	C	328	333	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	71	first strand
Strand 2	C	77	82	anti-parallel
Strand 3	C	86	91	anti-parallel
Strand 4	C	97	102	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	113	first strand
Strand 2	C	119	123	anti-parallel
Strand 3	C	128	133	anti-parallel
Strand 4	C	147	151	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	161	first strand
Strand 2	C	167	172	anti-parallel
Strand 3	C	176	181	anti-parallel
Strand 4	C	187	192	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	203	first strand
Strand 2	C	211	216	anti-parallel
Strand 3	C	221	225	anti-parallel
Strand 4	C	231	235	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	247	first strand
Strand 2	C	253	258	anti-parallel
Strand 3	C	263	267	anti-parallel
Strand 4	C	272	277	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	286	291	first strand
Strand 2	C	297	302	anti-parallel
Strand 3	C	307	311	anti-parallel
Strand 4	C	317	321	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	60	first strand
Strand 2	D	348	353	anti-parallel
Strand 3	D	340	344	anti-parallel
Strand 4	D	328	333	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	71	first strand
Strand 2	D	77	82	anti-parallel
Strand 3	D	86	91	anti-parallel
Strand 4	D	97	102	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	113	first strand
Strand 2	D	119	123	anti-parallel
Strand 3	D	128	133	anti-parallel
Strand 4	D	147	151	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	161	first strand
Strand 2	D	167	172	anti-parallel
Strand 3	D	176	181	anti-parallel
Strand 4	D	186	192	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	203	first strand
Strand 2	D	211	216	anti-parallel
Strand 3	D	221	225	anti-parallel
Strand 4	D	231	235	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	242	247	first strand
Strand 2	D	253	258	anti-parallel
Strand 3	D	263	267	anti-parallel
Strand 4	D	272	277	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	286	291	first strand
Strand 2	D	297	302	anti-parallel
Strand 3	D	307	311	anti-parallel
Strand 4	D	317	321	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6N9G

Analysis of interatomic Contacts of Structural Units in PDB entry:
6N9G