Analysis of interatomic Contacts of Structural Units in PDB entry:
6N9J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6N9J entry

There are 4 chains in PDB entry 6N9J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 30ASP 395
C
 VAL 402THR 404
B
 GLY 31VAL 397
D
 VAL 402THR 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6N9J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 47Right-handed 310
Helix 2
AA2
A
48 60Right-handed alpha
Helix 3
AA3
A
61 63Right-handed 310
Helix 4
AA4
A
107 122Right-handed alpha
Helix 5
AA5
A
161 169Right-handed alpha
Helix 6
AA6
A
170 172Right-handed 310
Helix 7
AA7
A
187 194Right-handed alpha
Helix 8
AA8
A
214 223Right-handed alpha
Helix 9
AA9
A
227 244Right-handed alpha
Helix 10
AB1
A
269 282Right-handed alpha
Helix 11
AB2
A
312 320Right-handed alpha
Helix 12
AB3
A
322 336Right-handed alpha
Helix 13
AB4
A
376 386Right-handed alpha
Helix 14
AB5
A
386 392Right-handed alpha
Helix 15
AB6
B
45 60Right-handed alpha
Helix 16
AB7
B
61 63Right-handed 310
Helix 17
AB8
B
107 122Right-handed alpha
Helix 18
AB9
B
161 170Right-handed alpha
Helix 19
AC1
B
187 194Right-handed alpha
Helix 20
AC2
B
214 223Right-handed alpha
Helix 21
AC3
B
227 244Right-handed alpha
Helix 22
AC4
B
269 282Right-handed alpha
Helix 23
AC5
B
294 298Right-handed 310
Helix 24
AC6
B
312 320Right-handed alpha
Helix 25
AC7
B
322 336Right-handed alpha
Helix 26
AC8
B
376 386Right-handed alpha
Helix 27
AC9
B
387 392Right-handed alpha
Helix 28
AD1
B
393 397Right-handed 310
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There are 8 sheets in PDB entry 6N9J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 99first strand
Strand 2
A
81 87anti-parallel
Strand 3
A
68 75anti-parallel
Strand 4
A
31 40parallel
Strand 5
A
124 132parallel
Strand 6
A
177 181parallel
Strand 7
A
200 203parallel
Strand 8
A
261 266anti-parallel
Strand 9
A
337 342anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 152first strand
Strand 2
A
158 160anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 311first strand
Strand 2
A
367 368anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 349first strand
Strand 2
A
355 359anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 99first strand
Strand 2
B
81 87anti-parallel
Strand 3
B
68 75anti-parallel
Strand 4
B
33 40parallel
Strand 5
B
126 132parallel
Strand 6
B
175 181parallel
Strand 7
B
198 203parallel
Strand 8
B
261 266anti-parallel
Strand 9
B
337 342anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 152first strand
Strand 2
B
158 160anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 311first strand
Strand 2
B
367 368anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
345 349first strand
Strand 2
B
355 359anti-parallel
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