Analysis of interatomic Contacts of Structural Units in PDB entry:
6N9K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6N9K entry

There are 4 chains in PDB entry 6N9K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 18ALA 247
A
 TRP 249GLN 377
B
 PRO 21ALA 247
B
 TRP 249GLN 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 6N9K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 40Right-handed alpha
Helix 2
AA2
A
81 96Right-handed alpha
Helix 3
AA3
A
104 108Right-handed 310
Helix 4
AA4
A
114 118Right-handed 310
Helix 5
AA5
A
121 127Right-handed alpha
Helix 6
AA6
A
143 154Right-handed alpha
Helix 7
AA7
A
167 179Right-handed alpha
Helix 8
AA8
A
180 183Right-handed 310
Helix 9
AA9
A
185 194Right-handed alpha
Helix 10
AB1
A
208 215Right-handed 310
Helix 11
AB2
A
232 237Right-handed alpha
Helix 12
AB3
A
242 255Right-handed alpha
Helix 13
AB4
A
256 259Right-handed 310
Helix 14
AB5
A
261 272Right-handed alpha
Helix 15
AB6
A
295 303Right-handed alpha
Helix 16
AB7
A
304 309Right-handed alpha
Helix 17
AB8
A
346 349Right-handed 310
Helix 18
AB9
A
361 376Right-handed alpha
Helix 19
AC1
B
22 40Right-handed alpha
Helix 20
AC2
B
81 96Right-handed alpha
Helix 21
AC3
B
104 108Right-handed 310
Helix 22
AC4
B
114 118Right-handed 310
Helix 23
AC5
B
121 127Right-handed alpha
Helix 24
AC6
B
143 154Right-handed alpha
Helix 25
AC7
B
167 179Right-handed alpha
Helix 26
AC8
B
185 194Right-handed alpha
Helix 27
AC9
B
208 215Right-handed 310
Helix 28
AD1
B
232 237Right-handed alpha
Helix 29
AD2
B
242 255Right-handed alpha
Helix 30
AD3
B
256 259Right-handed 310
Helix 31
AD4
B
261 272Right-handed alpha
Helix 32
AD5
B
295 303Right-handed alpha
Helix 33
AD6
B
304 309Right-handed alpha
Helix 34
AD7
B
346 349Right-handed 310
Helix 35
AD8
B
361 377Right-handed alpha
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There are 8 sheets in PDB entry 6N9K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
53 63anti-parallel
Strand 3
A
43 50anti-parallel
Strand 4
A
350 356anti-parallel
Strand 5
A
339 345anti-parallel
Strand 6
A
327 334anti-parallel
Strand 7
A
288 291anti-parallel
Strand 8
A
281 283anti-parallel
Strand 9
A
274 278anti-parallel
Strand 10
A
315 321anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
240 241anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 164first strand
Strand 2
A
312 313anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 220first strand
Strand 2
A
223 225anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 69first strand
Strand 2
B
53 63anti-parallel
Strand 3
B
43 50anti-parallel
Strand 4
B
350 356anti-parallel
Strand 5
B
338 345anti-parallel
Strand 6
B
327 335anti-parallel
Strand 7
B
288 291anti-parallel
Strand 8
B
281 283anti-parallel
Strand 9
B
274 278anti-parallel
Strand 10
B
315 321anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 77first strand
Strand 2
B
240 241anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 164first strand
Strand 2
B
312 313anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 220first strand
Strand 2
B
223 225anti-parallel
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