Analysis of interatomic Contacts of Structural Units in PDB entry:
6N9N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6N9N entry

There are 2 chains in PDB entry 6N9N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2GLN 484
B
 PHE 5GLN 484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6N9N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 16Right-handed alpha
Helix 2
AA2
A
31 36Right-handed 310
Helix 3
AA3
A
127 138Right-handed alpha
Helix 4
AA4
A
147 153Right-handed alpha
Helix 5
AA5
A
289 304Right-handed alpha
Helix 6
AA6
A
307 322Right-handed alpha
Helix 7
AA7
A
324 340Right-handed alpha
Helix 8
AA8
A
349 357Right-handed alpha
Helix 9
AA9
A
367 383Right-handed alpha
Helix 10
AB1
A
385 395Right-handed alpha
Helix 11
AB2
A
401 414Right-handed alpha
Helix 12
AB3
A
427 432Right-handed 310
Helix 13
AB4
A
439 447Right-handed alpha
Helix 14
AB5
A
462 464Right-handed 310
Helix 15
AB6
A
465 482Right-handed alpha
Helix 16
AB7
B
6 16Right-handed alpha
Helix 17
AB8
B
127 138Right-handed alpha
Helix 18
AB9
B
147 153Right-handed alpha
Helix 19
AC1
B
288 302Right-handed alpha
Helix 20
AC2
B
303 306Right-handed 310
Helix 21
AC3
B
307 322Right-handed alpha
Helix 22
AC4
B
324 342Right-handed alpha
Helix 23
AC5
B
349 357Right-handed alpha
Helix 24
AC6
B
367 383Right-handed alpha
Helix 25
AC7
B
385 395Right-handed alpha
Helix 26
AC8
B
401 415Right-handed alpha
Helix 27
AC9
B
427 432Right-handed alpha
Helix 28
AD1
B
439 447Right-handed alpha
Helix 29
AD2
B
462 464Right-handed 310
Helix 30
AD3
B
465 481Right-handed alpha
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There are 9 sheets in PDB entry 6N9N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
A
214 223anti-parallel
Strand 3
A
157 167anti-parallel
Strand 4
A
119 125anti-parallel
Strand 5
A
87 89anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
40 43anti-parallel
Strand 3
A
157 167anti-parallel
Strand 4
A
214 223anti-parallel
Strand 5
A
229 231anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
119 125anti-parallel
Strand 3
A
87 89anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
207 209anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 452first strand
Strand 2
A
459 460anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 25first strand
Strand 2
B
214 223anti-parallel
Strand 3
B
157 167anti-parallel
Strand 4
B
121 125anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
40 43anti-parallel
Strand 3
B
157 167anti-parallel
Strand 4
B
214 223anti-parallel
Strand 5
B
229 231anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 173first strand
Strand 2
B
207 209anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
423 424first strand
Strand 2
B
459 460anti-parallel
Strand 3
B
451 452anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il