Analysis of interatomic Contacts of Structural Units in PDB entry:
6N9U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6N9U entry

There are 5 chains in PDB entry 6N9U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	VAL 10	TRP 260
F	THR 65	TRP 260
H	MET 1	HIS 704
P	A 1	G 5
T	T 2002	T 2013

There are 34 helices in PDB entry 6N9U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	87	95	Right-handed alpha
Helix 2	AA2	E	100	104	Right-handed 310
Helix 3	AA3	E	159	170	Right-handed alpha
Helix 4	AA4	E	187	192	Right-handed alpha
Helix 5	AA5	E	195	199	Right-handed 310
Helix 6	AA6	E	237	243	Right-handed alpha
Helix 7	AA7	E	244	246	Right-handed 310
Helix 8	AA8	E	247	256	Right-handed alpha
Helix 9	AA9	F	87	95	Right-handed alpha
Helix 10	AB1	F	159	169	Right-handed alpha
Helix 11	AB2	F	186	191	Right-handed alpha
Helix 12	AB3	F	209	220	Right-handed alpha
Helix 13	AB4	F	237	244	Right-handed alpha
Helix 14	AB5	F	249	254	Right-handed alpha
Helix 15	AB6	H	38	52	Right-handed alpha
Helix 16	AB7	H	64	76	Right-handed alpha
Helix 17	AB8	H	94	99	Right-handed alpha
Helix 18	AB9	H	124	132	Right-handed alpha
Helix 19	AC1	H	138	151	Right-handed alpha
Helix 20	AC2	H	164	186	Right-handed alpha
Helix 21	AC3	H	212	231	Right-handed alpha
Helix 22	AC4	H	236	246	Right-handed alpha
Helix 23	AC5	H	254	259	Right-handed alpha
Helix 24	AC6	H	340	348	Right-handed alpha
Helix 25	AC7	H	378	400	Right-handed alpha
Helix 26	AC8	H	405	409	Right-handed 310
Helix 27	AC9	H	448	453	Right-handed alpha
Helix 28	AD1	H	478	488	Right-handed alpha
Helix 29	AD2	H	504	514	Right-handed alpha
Helix 30	AD3	H	517	530	Right-handed alpha
Helix 31	AD4	H	544	555	Right-handed alpha
Helix 32	AD5	H	561	573	Right-handed alpha
Helix 33	AD6	H	608	637	Right-handed alpha
Helix 34	AD7	H	662	684	Right-handed alpha

There are 13 sheets in PDB entry 6N9U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	15	first strand
Strand 2	E	26	29	anti-parallel
Strand 3	E	34	36	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	99	first strand
Strand 2	E	106	112	anti-parallel
Strand 3	E	118	122	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	142	first strand
Strand 2	E	175	178	anti-parallel
Strand 3	E	152	156	parallel
Strand 4	E	201	204	parallel
Strand 5	E	228	230	parallel
Strand 6	E	258	259	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	100	first strand
Strand 2	F	105	112	anti-parallel
Strand 3	F	118	124	anti-parallel
Strand 4	F	131	132	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	141	142	first strand
Strand 2	F	177	178	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	155	first strand
Strand 2	F	202	204	parallel
Strand 3	F	228	230	parallel
Strand 4	F	258	259	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	32	34	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	2	8	anti-parallel
Strand 4	H	56	57	parallel
Strand 5	H	88	89	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	232	233	first strand
Strand 2	H	415	416	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	264	267	first strand
Strand 2	H	329	332	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	419	421	first strand
Strand 2	H	431	433	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	646	651	first strand
Strand 2	H	656	660	anti-parallel
Strand 3	H	470	476	anti-parallel
Strand 4	H	692	697	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	574	579	first strand
Strand 2	H	584	588	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	592	594	first strand
Strand 2	H	600	602	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6N9U

Analysis of interatomic Contacts of Structural Units in PDB entry:
6N9U