Analysis of interatomic Contacts of Structural Units in PDB entry:
6N9V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6N9V entry

There are 9 chains in PDB entry 6N9V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 264	SER 548
B	GLY 264	GLY 549
C	GLY 264	TYR 547
D	GLY 264	SER 546
E	VAL 10	SER 545
F	THR 65	SER 545
H	MET 1	HIS 704
P	A 1	G 5
T	T 2002	T 2042

There are 93 helices in PDB entry 6N9V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	273	280	Right-handed alpha
Helix 2	AA2	A	294	298	Right-handed 310
Helix 3	AA3	A	320	331	Right-handed alpha
Helix 4	AA4	A	347	358	Right-handed alpha
Helix 5	AA5	A	377	386	Right-handed alpha
Helix 6	AA6	A	387	389	Right-handed 310
Helix 7	AA7	A	406	415	Right-handed alpha
Helix 8	AA8	A	425	430	Right-handed alpha
Helix 9	AA9	A	439	454	Right-handed alpha
Helix 10	AB1	A	474	478	Right-handed 310
Helix 11	AB2	A	482	486	Right-handed 310
Helix 12	AB3	B	271	280	Right-handed alpha
Helix 13	AB4	B	317	332	Right-handed alpha
Helix 14	AB5	B	345	358	Right-handed alpha
Helix 15	AB6	B	365	374	Right-handed alpha
Helix 16	AB7	B	377	384	Right-handed alpha
Helix 17	AB8	B	385	389	Right-handed 310
Helix 18	AB9	B	403	415	Right-handed alpha
Helix 19	AC1	B	425	429	Right-handed 310
Helix 20	AC2	B	437	454	Right-handed alpha
Helix 21	AC3	B	474	478	Right-handed 310
Helix 22	AC4	C	271	279	Right-handed alpha
Helix 23	AC5	C	293	299	Right-handed alpha
Helix 24	AC6	C	319	332	Right-handed alpha
Helix 25	AC7	C	345	350	Right-handed alpha
Helix 26	AC8	C	351	358	Right-handed alpha
Helix 27	AC9	C	365	375	Right-handed alpha
Helix 28	AD1	C	376	384	Right-handed alpha
Helix 29	AD2	C	405	415	Right-handed alpha
Helix 30	AD3	C	425	429	Right-handed 310
Helix 31	AD4	C	437	457	Right-handed alpha
Helix 32	AD5	C	474	478	Right-handed 310
Helix 33	AD6	D	271	277	Right-handed alpha
Helix 34	AD7	D	293	299	Right-handed alpha
Helix 35	AD8	D	317	332	Right-handed alpha
Helix 36	AD9	D	345	358	Right-handed alpha
Helix 37	AE1	D	365	370	Right-handed alpha
Helix 38	AE2	D	371	376	Right-handed alpha
Helix 39	AE3	D	377	386	Right-handed alpha
Helix 40	AE4	D	403	415	Right-handed alpha
Helix 41	AE5	D	440	456	Right-handed alpha
Helix 42	AE6	D	474	478	Right-handed 310
Helix 43	AE7	E	87	95	Right-handed alpha
Helix 44	AE8	E	101	104	Right-handed 310
Helix 45	AE9	E	159	169	Right-handed alpha
Helix 46	AF1	E	184	192	Right-handed alpha
Helix 47	AF2	E	195	199	Right-handed 310
Helix 48	AF3	E	237	243	Right-handed alpha
Helix 49	AF4	E	247	256	Right-handed alpha
Helix 50	AF5	E	271	277	Right-handed alpha
Helix 51	AF6	E	317	328	Right-handed alpha
Helix 52	AF7	E	345	358	Right-handed alpha
Helix 53	AF8	E	365	372	Right-handed alpha
Helix 54	AF9	E	378	387	Right-handed alpha
Helix 55	AG1	E	405	415	Right-handed alpha
Helix 56	AG2	E	440	457	Right-handed alpha
Helix 57	AG3	E	474	478	Right-handed 310
Helix 58	AG4	F	87	95	Right-handed alpha
Helix 59	AG5	F	159	168	Right-handed alpha
Helix 60	AG6	F	184	191	Right-handed alpha
Helix 61	AG7	F	195	199	Right-handed 310
Helix 62	AG8	F	209	219	Right-handed alpha
Helix 63	AG9	F	237	244	Right-handed alpha
Helix 64	AH1	F	249	256	Right-handed alpha
Helix 65	AH2	F	269	271	Right-handed 310
Helix 66	AH3	F	273	279	Right-handed alpha
Helix 67	AH4	F	295	299	Right-handed alpha
Helix 68	AH5	F	317	328	Right-handed alpha
Helix 69	AH6	F	345	358	Right-handed alpha
Helix 70	AH7	F	365	372	Right-handed alpha
Helix 71	AH8	F	378	386	Right-handed alpha
Helix 72	AH9	F	405	414	Right-handed alpha
Helix 73	AI1	F	440	457	Right-handed alpha
Helix 74	AI2	H	38	52	Right-handed alpha
Helix 75	AI3	H	64	76	Right-handed alpha
Helix 76	AI4	H	94	99	Right-handed alpha
Helix 77	AI5	H	124	132	Right-handed alpha
Helix 78	AI6	H	138	151	Right-handed alpha
Helix 79	AI7	H	165	186	Right-handed alpha
Helix 80	AI8	H	212	231	Right-handed alpha
Helix 81	AI9	H	236	246	Right-handed alpha
Helix 82	AJ1	H	254	259	Right-handed alpha
Helix 83	AJ2	H	340	348	Right-handed alpha
Helix 84	AJ3	H	378	400	Right-handed alpha
Helix 85	AJ4	H	405	409	Right-handed 310
Helix 86	AJ5	H	448	453	Right-handed alpha
Helix 87	AJ6	H	478	488	Right-handed alpha
Helix 88	AJ7	H	504	514	Right-handed alpha
Helix 89	AJ8	H	517	530	Right-handed alpha
Helix 90	AJ9	H	544	555	Right-handed alpha
Helix 91	AK1	H	561	573	Right-handed alpha
Helix 92	AK2	H	608	637	Right-handed alpha
Helix 93	AK3	H	662	684	Right-handed alpha

There are 20 sheets in PDB entry 6N9V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	267	first strand
Strand 2	B	392	394	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	543	544	first strand
Strand 2	A	528	534	anti-parallel
Strand 3	A	513	521	anti-parallel
Strand 4	A	498	503	anti-parallel
Strand 5	A	306	311	parallel
Strand 6	A	459	463	parallel
Strand 7	A	420	423	parallel
Strand 8	A	337	340	parallel
Strand 9	A	392	394	parallel
Strand 10	F	265	267	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	266	first strand
Strand 2	C	391	394	anti-parallel
Strand 3	C	337	340	parallel
Strand 4	C	420	423	parallel
Strand 5	C	459	463	parallel
Strand 6	C	307	311	parallel
Strand 7	C	498	503	parallel
Strand 8	C	513	521	anti-parallel
Strand 9	C	528	535	anti-parallel
Strand 10	C	542	544	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	340	first strand
Strand 2	B	420	423	parallel
Strand 3	B	459	463	parallel
Strand 4	B	306	311	parallel
Strand 5	B	498	503	parallel
Strand 6	B	513	521	anti-parallel
Strand 7	B	528	535	anti-parallel
Strand 8	B	542	544	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	267	first strand
Strand 2	D	392	394	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	E	391	393	anti-parallel
Strand 3	E	337	340	parallel
Strand 4	E	420	423	parallel
Strand 5	E	459	465	parallel
Strand 6	E	307	312	parallel
Strand 7	E	498	503	parallel
Strand 8	E	514	521	anti-parallel
Strand 9	E	528	534	anti-parallel
Strand 10	E	543	544	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	340	first strand
Strand 2	D	420	423	parallel
Strand 3	D	459	463	parallel
Strand 4	D	307	311	parallel
Strand 5	D	498	503	parallel
Strand 6	D	514	521	anti-parallel
Strand 7	D	528	534	anti-parallel
Strand 8	D	543	544	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	15	first strand
Strand 2	E	26	29	anti-parallel
Strand 3	E	34	36	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	77	first strand
Strand 2	E	96	99	anti-parallel
Strand 3	E	106	112	anti-parallel
Strand 4	E	118	124	anti-parallel
Strand 5	E	131	134	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	142	first strand
Strand 2	E	175	178	anti-parallel
Strand 3	E	152	156	parallel
Strand 4	E	201	204	parallel
Strand 5	E	228	230	parallel
Strand 6	E	258	259	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	100	first strand
Strand 2	F	105	112	anti-parallel
Strand 3	F	118	124	anti-parallel
Strand 4	F	131	132	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	175	176	first strand
Strand 2	F	152	155	parallel
Strand 3	F	201	204	parallel
Strand 4	F	228	230	parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	391	392	first strand
Strand 2	F	337	338	parallel
Strand 3	F	420	423	parallel
Strand 4	F	459	463	parallel
Strand 5	F	307	311	parallel
Strand 6	F	498	503	parallel
Strand 7	F	514	521	anti-parallel
Strand 8	F	528	534	anti-parallel
Strand 9	F	543	544	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	32	34	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	2	8	anti-parallel
Strand 4	H	56	58	parallel
Strand 5	H	88	90	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	232	233	first strand
Strand 2	H	415	416	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	264	267	first strand
Strand 2	H	329	332	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	419	421	first strand
Strand 2	H	431	433	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	646	651	first strand
Strand 2	H	656	660	anti-parallel
Strand 3	H	470	476	anti-parallel
Strand 4	H	692	697	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	574	579	first strand
Strand 2	H	584	588	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	592	594	first strand
Strand 2	H	600	602	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6N9V

Analysis of interatomic Contacts of Structural Units in PDB entry:
6N9V