Analysis of interatomic Contacts of Structural Units in PDB entry:
6N9W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6N9W entry

There are 9 chains in PDB entry 6N9W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 10	GLY 549
B	THR 65	GLY 549
C	ASP 263	TYR 547
D	GLU 273	GLY 549
E	VAL 285	SER 545
F	GLY 264	SER 280
H	MET 1	HIS 704
P	A 1	G 5
T	T 2002	T 2042

There are 92 helices in PDB entry 6N9W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	87	95	Right-handed alpha
Helix 2	AA2	A	101	104	Right-handed 310
Helix 3	AA3	A	159	169	Right-handed alpha
Helix 4	AA4	A	184	192	Right-handed alpha
Helix 5	AA5	A	193	198	Right-handed alpha
Helix 6	AA6	A	237	244	Right-handed alpha
Helix 7	AA7	A	247	255	Right-handed alpha
Helix 8	AA8	A	269	271	Right-handed 310
Helix 9	AA9	A	272	280	Right-handed alpha
Helix 10	AB1	A	295	300	Right-handed alpha
Helix 11	AB2	A	317	334	Right-handed alpha
Helix 12	AB3	A	345	358	Right-handed alpha
Helix 13	AB4	A	361	364	Right-handed 310
Helix 14	AB5	A	365	372	Right-handed alpha
Helix 15	AB6	A	377	387	Right-handed alpha
Helix 16	AB7	A	403	415	Right-handed alpha
Helix 17	AB8	A	439	454	Right-handed alpha
Helix 18	AB9	A	474	478	Right-handed 310
Helix 19	AC1	A	482	486	Right-handed 310
Helix 20	AC2	A	491	496	Right-handed alpha
Helix 21	AC3	B	87	95	Right-handed alpha
Helix 22	AC4	B	159	168	Right-handed alpha
Helix 23	AC5	B	184	191	Right-handed alpha
Helix 24	AC6	B	195	199	Right-handed 310
Helix 25	AC7	B	209	219	Right-handed alpha
Helix 26	AC8	B	237	244	Right-handed alpha
Helix 27	AC9	B	248	256	Right-handed alpha
Helix 28	AD1	B	271	280	Right-handed alpha
Helix 29	AD2	B	317	334	Right-handed alpha
Helix 30	AD3	B	345	358	Right-handed alpha
Helix 31	AD4	B	365	375	Right-handed alpha
Helix 32	AD5	B	377	386	Right-handed alpha
Helix 33	AD6	B	403	415	Right-handed alpha
Helix 34	AD7	B	425	430	Right-handed alpha
Helix 35	AD8	B	437	454	Right-handed alpha
Helix 36	AD9	B	474	478	Right-handed 310
Helix 37	AE1	B	482	486	Right-handed 310
Helix 38	AE2	B	491	496	Right-handed alpha
Helix 39	AE3	C	271	279	Right-handed alpha
Helix 40	AE4	C	293	300	Right-handed alpha
Helix 41	AE5	C	317	332	Right-handed alpha
Helix 42	AE6	C	345	350	Right-handed alpha
Helix 43	AE7	C	351	358	Right-handed alpha
Helix 44	AE8	C	365	375	Right-handed alpha
Helix 45	AE9	C	376	386	Right-handed alpha
Helix 46	AF1	C	402	415	Right-handed alpha
Helix 47	AF2	C	425	429	Right-handed 310
Helix 48	AF3	C	437	457	Right-handed alpha
Helix 49	AF4	C	482	486	Right-handed 310
Helix 50	AF5	D	274	279	Right-handed alpha
Helix 51	AF6	D	294	299	Right-handed alpha
Helix 52	AF7	D	317	331	Right-handed alpha
Helix 53	AF8	D	345	358	Right-handed alpha
Helix 54	AF9	D	371	376	Right-handed alpha
Helix 55	AG1	D	377	386	Right-handed alpha
Helix 56	AG2	D	403	416	Right-handed alpha
Helix 57	AG3	D	440	457	Right-handed alpha
Helix 58	AG4	D	474	478	Right-handed 310
Helix 59	AG5	E	294	299	Right-handed alpha
Helix 60	AG6	E	317	331	Right-handed alpha
Helix 61	AG7	E	347	358	Right-handed alpha
Helix 62	AG8	E	366	372	Right-handed alpha
Helix 63	AG9	E	378	384	Right-handed alpha
Helix 64	AH1	E	405	415	Right-handed alpha
Helix 65	AH2	E	440	457	Right-handed alpha
Helix 66	AH3	E	474	478	Right-handed 310
Helix 67	AH4	E	489	493	Right-handed 310
Helix 68	AH5	F	267	271	Right-handed 310
Helix 69	AH6	F	274	280	Right-handed alpha
Helix 70	AH7	H	38	52	Right-handed alpha
Helix 71	AH8	H	64	75	Right-handed alpha
Helix 72	AH9	H	91	98	Right-handed alpha
Helix 73	AI1	H	124	132	Right-handed alpha
Helix 74	AI2	H	139	150	Right-handed alpha
Helix 75	AI3	H	165	186	Right-handed alpha
Helix 76	AI4	H	212	231	Right-handed alpha
Helix 77	AI5	H	236	246	Right-handed alpha
Helix 78	AI6	H	254	259	Right-handed alpha
Helix 79	AI7	H	340	348	Right-handed alpha
Helix 80	AI8	H	376	400	Right-handed alpha
Helix 81	AI9	H	448	453	Right-handed alpha
Helix 82	AJ1	H	479	488	Right-handed alpha
Helix 83	AJ2	H	489	491	Right-handed 310
Helix 84	AJ3	H	496	502	Right-handed alpha
Helix 85	AJ4	H	504	514	Right-handed alpha
Helix 86	AJ5	H	517	530	Right-handed alpha
Helix 87	AJ6	H	537	542	Right-handed alpha
Helix 88	AJ7	H	544	557	Right-handed alpha
Helix 89	AJ8	H	561	573	Right-handed alpha
Helix 90	AJ9	H	605	607	Right-handed 310
Helix 91	AK1	H	608	637	Right-handed alpha
Helix 92	AK2	H	662	684	Right-handed alpha

There are 18 sheets in PDB entry 6N9W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	15	first strand
Strand 2	A	26	29	anti-parallel
Strand 3	A	34	36	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	77	first strand
Strand 2	A	96	99	anti-parallel
Strand 3	A	106	112	anti-parallel
Strand 4	A	118	124	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	175	178	anti-parallel
Strand 3	A	152	156	parallel
Strand 4	A	201	205	parallel
Strand 5	A	228	230	parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	267	first strand
Strand 2	B	391	394	anti-parallel
Strand 3	B	337	340	parallel
Strand 4	B	420	423	parallel
Strand 5	B	459	463	parallel
Strand 6	B	306	311	parallel
Strand 7	B	498	503	parallel
Strand 8	B	513	521	anti-parallel
Strand 9	B	528	534	anti-parallel
Strand 10	B	543	544	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	392	first strand
Strand 2	A	337	340	parallel
Strand 3	A	420	423	parallel
Strand 4	A	459	463	parallel
Strand 5	A	306	311	parallel
Strand 6	A	498	504	parallel
Strand 7	A	513	521	anti-parallel
Strand 8	A	528	534	anti-parallel
Strand 9	A	543	544	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	100	first strand
Strand 2	B	105	112	anti-parallel
Strand 3	B	118	124	anti-parallel
Strand 4	B	130	132	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	177	first strand
Strand 2	B	152	156	parallel
Strand 3	B	201	205	parallel
Strand 4	B	228	230	parallel
Strand 5	B	258	259	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	266	first strand
Strand 2	C	391	394	anti-parallel
Strand 3	C	337	340	parallel
Strand 4	C	420	423	parallel
Strand 5	C	459	463	parallel
Strand 6	C	307	311	parallel
Strand 7	C	498	503	parallel
Strand 8	C	513	521	anti-parallel
Strand 9	C	528	535	anti-parallel
Strand 10	C	542	544	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	267	first strand
Strand 2	D	391	394	anti-parallel
Strand 3	D	337	340	parallel
Strand 4	D	420	423	parallel
Strand 5	D	459	464	parallel
Strand 6	D	307	311	parallel
Strand 7	D	498	504	parallel
Strand 8	D	514	521	anti-parallel
Strand 9	D	528	534	anti-parallel
Strand 10	D	543	544	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	337	338	first strand
Strand 2	E	420	423	parallel
Strand 3	E	459	464	parallel
Strand 4	E	307	311	parallel
Strand 5	E	498	503	parallel
Strand 6	E	514	518	anti-parallel
Strand 7	E	528	534	anti-parallel
Strand 8	E	543	544	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	32	33	first strand
Strand 2	H	22	25	anti-parallel
Strand 3	H	2	4	anti-parallel
Strand 4	H	56	58	parallel
Strand 5	H	88	90	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	8	first strand
Strand 2	H	18	20	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	232	233	first strand
Strand 2	H	415	416	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	264	267	first strand
Strand 2	H	329	332	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	419	421	first strand
Strand 2	H	431	433	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	646	651	first strand
Strand 2	H	656	660	anti-parallel
Strand 3	H	470	476	anti-parallel
Strand 4	H	692	697	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	574	579	first strand
Strand 2	H	584	588	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	592	594	first strand
Strand 2	H	600	602	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6N9W

Analysis of interatomic Contacts of Structural Units in PDB entry:
6N9W