Analysis of interatomic Contacts of Structural Units in PDB entry:
6N9X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6N9X entry

There are 9 chains in PDB entry 6N9X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 264	GLY 549
B	VAL 10	GLY 549
C	THR 65	TYR 547
D	ASP 263	GLY 549
E	VAL 285	SER 545
F	GLY 264	SER 280
H	MET 1	HIS 704
P	A 1	G 5
T	T 2002	T 2042

There are 85 helices in PDB entry 6N9X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	273	280	Right-handed alpha
Helix 2	AA2	A	317	331	Right-handed alpha
Helix 3	AA3	A	345	358	Right-handed alpha
Helix 4	AA4	A	361	364	Right-handed 310
Helix 5	AA5	A	365	372	Right-handed alpha
Helix 6	AA6	A	379	384	Right-handed alpha
Helix 7	AA7	A	385	389	Right-handed 310
Helix 8	AA8	A	405	415	Right-handed alpha
Helix 9	AA9	A	439	454	Right-handed alpha
Helix 10	AB1	A	474	478	Right-handed 310
Helix 11	AB2	A	482	486	Right-handed 310
Helix 12	AB3	B	87	95	Right-handed alpha
Helix 13	AB4	B	100	104	Right-handed 310
Helix 14	AB5	B	159	170	Right-handed alpha
Helix 15	AB6	B	187	192	Right-handed alpha
Helix 16	AB7	B	195	199	Right-handed 310
Helix 17	AB8	B	238	243	Right-handed alpha
Helix 18	AB9	B	247	256	Right-handed alpha
Helix 19	AC1	B	271	280	Right-handed alpha
Helix 20	AC2	B	295	300	Right-handed alpha
Helix 21	AC3	B	317	331	Right-handed alpha
Helix 22	AC4	B	345	358	Right-handed alpha
Helix 23	AC5	B	365	373	Right-handed alpha
Helix 24	AC6	B	377	386	Right-handed alpha
Helix 25	AC7	B	403	415	Right-handed alpha
Helix 26	AC8	B	437	454	Right-handed alpha
Helix 27	AC9	B	474	478	Right-handed 310
Helix 28	AD1	C	87	95	Right-handed alpha
Helix 29	AD2	C	159	168	Right-handed alpha
Helix 30	AD3	C	184	191	Right-handed alpha
Helix 31	AD4	C	195	199	Right-handed 310
Helix 32	AD5	C	209	219	Right-handed alpha
Helix 33	AD6	C	237	244	Right-handed alpha
Helix 34	AD7	C	249	256	Right-handed alpha
Helix 35	AD8	C	271	279	Right-handed alpha
Helix 36	AD9	C	293	299	Right-handed alpha
Helix 37	AE1	C	319	332	Right-handed alpha
Helix 38	AE2	C	345	350	Right-handed alpha
Helix 39	AE3	C	351	358	Right-handed alpha
Helix 40	AE4	C	365	375	Right-handed alpha
Helix 41	AE5	C	376	386	Right-handed alpha
Helix 42	AE6	C	403	414	Right-handed alpha
Helix 43	AE7	C	425	429	Right-handed 310
Helix 44	AE8	C	437	457	Right-handed alpha
Helix 45	AE9	C	474	478	Right-handed 310
Helix 46	AF1	C	482	486	Right-handed 310
Helix 47	AF2	D	271	279	Right-handed alpha
Helix 48	AF3	D	294	299	Right-handed alpha
Helix 49	AF4	D	317	331	Right-handed alpha
Helix 50	AF5	D	345	358	Right-handed alpha
Helix 51	AF6	D	368	376	Right-handed alpha
Helix 52	AF7	D	377	386	Right-handed alpha
Helix 53	AF8	D	403	417	Right-handed alpha
Helix 54	AF9	D	440	457	Right-handed alpha
Helix 55	AG1	D	474	478	Right-handed 310
Helix 56	AG2	E	294	299	Right-handed alpha
Helix 57	AG3	E	317	328	Right-handed alpha
Helix 58	AG4	E	347	358	Right-handed alpha
Helix 59	AG5	E	365	372	Right-handed alpha
Helix 60	AG6	E	378	386	Right-handed alpha
Helix 61	AG7	E	405	415	Right-handed alpha
Helix 62	AG8	E	440	457	Right-handed alpha
Helix 63	AG9	E	474	478	Right-handed 310
Helix 64	AH1	E	490	494	Right-handed 310
Helix 65	AH2	F	273	279	Right-handed alpha
Helix 66	AH3	H	38	52	Right-handed alpha
Helix 67	AH4	H	64	76	Right-handed alpha
Helix 68	AH5	H	94	99	Right-handed alpha
Helix 69	AH6	H	124	132	Right-handed alpha
Helix 70	AH7	H	138	151	Right-handed alpha
Helix 71	AH8	H	165	186	Right-handed alpha
Helix 72	AH9	H	212	231	Right-handed alpha
Helix 73	AI1	H	236	246	Right-handed alpha
Helix 74	AI2	H	254	259	Right-handed alpha
Helix 75	AI3	H	340	348	Right-handed alpha
Helix 76	AI4	H	378	400	Right-handed alpha
Helix 77	AI5	H	405	409	Right-handed 310
Helix 78	AI6	H	448	453	Right-handed alpha
Helix 79	AI7	H	478	488	Right-handed alpha
Helix 80	AI8	H	504	514	Right-handed alpha
Helix 81	AI9	H	517	530	Right-handed alpha
Helix 82	AJ1	H	544	555	Right-handed alpha
Helix 83	AJ2	H	561	573	Right-handed alpha
Helix 84	AJ3	H	608	637	Right-handed alpha
Helix 85	AJ4	H	662	684	Right-handed alpha

There are 17 sheets in PDB entry 6N9X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	267	first strand
Strand 2	B	391	394	anti-parallel
Strand 3	B	337	339	parallel
Strand 4	B	420	422	parallel
Strand 5	B	459	464	parallel
Strand 6	B	306	311	parallel
Strand 7	B	498	503	parallel
Strand 8	B	513	521	anti-parallel
Strand 9	B	528	534	anti-parallel
Strand 10	B	543	544	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	543	544	first strand
Strand 2	A	528	534	anti-parallel
Strand 3	A	513	521	anti-parallel
Strand 4	A	498	504	anti-parallel
Strand 5	A	306	311	parallel
Strand 6	A	459	463	parallel
Strand 7	A	420	423	parallel
Strand 8	A	337	340	parallel
Strand 9	A	391	393	parallel
Strand 10	F	266	267	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	15	first strand
Strand 2	B	26	29	anti-parallel
Strand 3	B	34	36	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	99	first strand
Strand 2	B	106	112	anti-parallel
Strand 3	B	118	124	anti-parallel
Strand 4	B	131	134	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	177	first strand
Strand 2	B	152	156	parallel
Strand 3	B	201	204	parallel
Strand 4	B	228	230	parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	C	391	393	anti-parallel
Strand 3	C	337	340	parallel
Strand 4	C	420	423	parallel
Strand 5	C	459	463	parallel
Strand 6	C	307	311	parallel
Strand 7	C	498	503	parallel
Strand 8	C	513	521	anti-parallel
Strand 9	C	528	535	anti-parallel
Strand 10	C	542	544	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	100	first strand
Strand 2	C	105	112	anti-parallel
Strand 3	C	118	124	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	176	first strand
Strand 2	C	153	155	parallel
Strand 3	C	202	204	parallel
Strand 4	C	228	230	parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	267	first strand
Strand 2	D	391	394	anti-parallel
Strand 3	D	337	338	parallel
Strand 4	D	420	423	parallel
Strand 5	D	459	465	parallel
Strand 6	D	307	312	parallel
Strand 7	D	498	503	parallel
Strand 8	D	514	521	anti-parallel
Strand 9	D	528	534	anti-parallel
Strand 10	D	543	544	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	267	first strand
Strand 2	E	391	394	anti-parallel
Strand 3	E	337	340	parallel
Strand 4	E	420	423	parallel
Strand 5	E	459	464	parallel
Strand 6	E	307	311	parallel
Strand 7	E	498	503	parallel
Strand 8	E	513	521	anti-parallel
Strand 9	E	528	534	anti-parallel
Strand 10	E	543	544	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	32	34	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	2	8	anti-parallel
Strand 4	H	56	58	parallel
Strand 5	H	88	90	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	232	233	first strand
Strand 2	H	415	416	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	264	267	first strand
Strand 2	H	329	332	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	419	421	first strand
Strand 2	H	431	433	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	646	651	first strand
Strand 2	H	656	660	anti-parallel
Strand 3	H	470	476	anti-parallel
Strand 4	H	692	697	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	574	579	first strand
Strand 2	H	584	588	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	592	594	first strand
Strand 2	H	600	602	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6N9X

Analysis of interatomic Contacts of Structural Units in PDB entry:
6N9X