Analysis of interatomic Contacts of Structural Units in PDB entry:
6N9Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6N9Y entry

There is 1 chain in PDB entry 6N9Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 552
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6N9Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 9Right-handed alpha
Helix 2
AA2
A
11 25Right-handed alpha
Helix 3
AA3
A
34 38Right-handed 310
Helix 4
AA4
A
47 55Right-handed alpha
Helix 5
AA5
A
60 73Right-handed alpha
Helix 6
AA6
A
77 91Right-handed alpha
Helix 7
AA7
A
96 115Right-handed alpha
Helix 8
AA8
A
116 123Right-handed alpha
Helix 9
AA9
A
141 146Right-handed 310
Helix 10
AB1
A
184 202Right-handed alpha
Helix 11
AB2
A
224 229Right-handed alpha
Helix 12
AB3
A
230 249Right-handed alpha
Helix 13
AB4
A
256 265Right-handed alpha
Helix 14
AB5
A
274 279Right-handed alpha
Helix 15
AB6
A
290 297Right-handed alpha
Helix 16
AB7
A
303 307Right-handed 310
Helix 17
AB8
A
311 318Right-handed alpha
Helix 18
AB9
A
323 334Right-handed alpha
Helix 19
AC1
A
338 344Right-handed alpha
Helix 20
AC2
A
355 362Right-handed alpha
Helix 21
AC3
A
408 422Right-handed alpha
Helix 22
AC4
A
429 431Right-handed 310
Helix 23
AC5
A
432 447Right-handed alpha
Helix 24
AC6
A
450 465Right-handed alpha
Helix 25
AC7
A
481 491Right-handed alpha
Helix 26
AC8
A
496 519Right-handed alpha
Helix 27
AC9
A
535 550Right-handed alpha
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There are 4 sheets in PDB entry 6N9Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
309 310anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 149first strand
Strand 2
A
178 180anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 162first strand
Strand 2
A
167 171anti-parallel
Strand 3
A
218 221parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 354first strand
Strand 2
A
367 375anti-parallel
Strand 3
A
398 403anti-parallel
Strand 4
A
390 395anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il