Analysis of interatomic Contacts of Structural Units in PDB entry:
6NAG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NAG entry

There are 2 chains in PDB entry 6NAG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 35HIS 393
B
 PRO 34HIS 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6NAG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 67Right-handed alpha
Helix 2
AA2
A
114 129Right-handed alpha
Helix 3
AA3
A
147 154Right-handed alpha
Helix 4
AA4
A
178 180Right-handed 310
Helix 5
AA5
A
184 195Right-handed alpha
Helix 6
AA6
A
211 218Right-handed alpha
Helix 7
AA7
A
238 247Right-handed alpha
Helix 8
AA8
A
251 264Right-handed alpha
Helix 9
AA9
A
280 295Right-handed alpha
Helix 10
AB1
A
298 305Right-handed 310
Helix 11
AB2
A
319 327Right-handed alpha
Helix 12
AB3
A
329 344Right-handed alpha
Helix 13
AB4
A
377 381Right-handed 310
Helix 14
AB5
A
382 385Right-handed 310
Helix 15
AB6
A
386 392Right-handed alpha
Helix 16
AB7
B
51 67Right-handed alpha
Helix 17
AB8
B
114 129Right-handed alpha
Helix 18
AB9
B
147 152Right-handed alpha
Helix 19
AC1
B
178 180Right-handed 310
Helix 20
AC2
B
184 194Right-handed alpha
Helix 21
AC3
B
211 218Right-handed alpha
Helix 22
AC4
B
238 247Right-handed alpha
Helix 23
AC5
B
251 264Right-handed alpha
Helix 24
AC6
B
280 295Right-handed alpha
Helix 25
AC7
B
298 305Right-handed 310
Helix 26
AC8
B
319 327Right-handed alpha
Helix 27
AC9
B
329 344Right-handed alpha
Helix 28
AD1
B
377 381Right-handed 310
Helix 29
AD2
B
382 385Right-handed 310
Helix 30
AD3
B
386 393Right-handed alpha
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There are 8 sheets in PDB entry 6NAG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 108first strand
Strand 2
A
86 95anti-parallel
Strand 3
A
74 81anti-parallel
Strand 4
A
39 45parallel
Strand 5
A
133 139parallel
Strand 6
A
199 205parallel
Strand 7
A
222 227parallel
Strand 8
A
272 277anti-parallel
Strand 9
A
346 349anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
174 175anti-parallel
Strand 3
A
182 183anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 318first strand
Strand 2
A
370 371anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
359 362anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 108first strand
Strand 2
B
86 95anti-parallel
Strand 3
B
74 81anti-parallel
Strand 4
B
37 45parallel
Strand 5
B
131 139parallel
Strand 6
B
199 205parallel
Strand 7
B
222 227parallel
Strand 8
B
272 277anti-parallel
Strand 9
B
346 349anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
174 175anti-parallel
Strand 3
B
182 183anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 318first strand
Strand 2
B
370 371anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
352 355first strand
Strand 2
B
359 362anti-parallel
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