Analysis of interatomic Contacts of Structural Units in PDB entry:
6NB2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NB2 entry

There are 2 chains in PDB entry 6NB2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1LYS 421
B
 HIS -3LEU 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6NB2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 61Right-handed 310
Helix 2
AA2
A
63 72Right-handed alpha
Helix 3
AA3
A
72 79Right-handed alpha
Helix 4
AA4
A
85 98Right-handed alpha
Helix 5
AA5
A
106 126Right-handed alpha
Helix 6
AA6
A
128 134Right-handed alpha
Helix 7
AA7
A
152 155Right-handed 310
Helix 8
AA8
A
173 195Right-handed alpha
Helix 9
AA9
A
213 228Right-handed alpha
Helix 10
AB1
A
243 246Right-handed 310
Helix 11
AB2
A
256 259Right-handed 310
Helix 12
AB3
A
263 278Right-handed alpha
Helix 13
AB4
A
291 303Right-handed alpha
Helix 14
AB5
A
317 328Right-handed alpha
Helix 15
AB6
A
336 341Right-handed alpha
Helix 16
AB7
A
342 356Right-handed alpha
Helix 17
AB8
A
372 382Right-handed alpha
Helix 18
AB9
A
393 411Right-handed alpha
Helix 19
AC1
A
415 421Right-handed 310
Helix 20
AC2
B
-3 1Right-handed 310
Helix 21
AC3
B
57 61Right-handed 310
Helix 22
AC4
B
63 72Right-handed alpha
Helix 23
AC5
B
72 79Right-handed alpha
Helix 24
AC6
B
85 98Right-handed alpha
Helix 25
AC7
B
106 126Right-handed alpha
Helix 26
AC8
B
128 134Right-handed alpha
Helix 27
AC9
B
152 155Right-handed 310
Helix 28
AD1
B
173 195Right-handed alpha
Helix 29
AD2
B
213 228Right-handed alpha
Helix 30
AD3
B
243 246Right-handed 310
Helix 31
AD4
B
256 259Right-handed 310
Helix 32
AD5
B
263 278Right-handed alpha
Helix 33
AD6
B
291 303Right-handed alpha
Helix 34
AD7
B
317 328Right-handed alpha
Helix 35
AD8
B
336 341Right-handed alpha
Helix 36
AD9
B
342 356Right-handed alpha
Helix 37
AE1
B
372 382Right-handed alpha
Helix 38
AE2
B
393 411Right-handed alpha
Helix 39
AE3
B
415 420Right-handed 310
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There are 6 sheets in PDB entry 6NB2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 12first strand
Strand 2
A
18 26anti-parallel
Strand 3
A
31 35anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
385 387parallel
Strand 3
A
359 363parallel
Strand 4
A
332 335parallel
Strand 5
A
307 310parallel
Strand 6
A
280 284parallel
Strand 7
A
237 241parallel
Strand 8
A
163 167anti-parallel
Strand 9
A
146 150anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
252 255anti-parallel
Strand 3
A
260 262anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 12first strand
Strand 2
B
18 26anti-parallel
Strand 3
B
31 35anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 144first strand
Strand 2
B
385 387parallel
Strand 3
B
359 363parallel
Strand 4
B
332 335parallel
Strand 5
B
307 310parallel
Strand 6
B
280 284parallel
Strand 7
B
237 241parallel
Strand 8
B
163 167anti-parallel
Strand 9
B
146 150anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 249first strand
Strand 2
B
252 255anti-parallel
Strand 3
B
260 262anti-parallel
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