Analysis of interatomic Contacts of Structural Units in PDB entry:
6NB5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NB5 entry

There are 4 chains in PDB entry 6NB5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 1	SER 229
L	ALA 3	THR 212
I	VAL 2	SER 229
M	ALA 3	THR 212

There are 17 helices in PDB entry 6NB5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	28	32	Right-handed 310
Helix 2	AA2	H	53	57	Right-handed 310
Helix 3	AA3	H	89	93	Right-handed 310
Helix 4	AA4	H	170	172	Right-handed 310
Helix 5	AA5	H	215	218	Right-handed 310
Helix 6	AA6	L	81	85	Right-handed 310
Helix 7	AA7	L	124	130	Right-handed alpha
Helix 8	AA8	L	184	191	Right-handed alpha
Helix 9	AA9	I	53	57	Right-handed 310
Helix 10	AB1	I	76	78	Right-handed 310
Helix 11	AB2	I	89	93	Right-handed 310
Helix 12	AB3	I	170	172	Right-handed 310
Helix 13	AB4	I	199	203	Right-handed 310
Helix 14	AB5	I	215	218	Right-handed 310
Helix 15	AB6	M	81	85	Right-handed 310
Helix 16	AB7	M	124	130	Right-handed alpha
Helix 17	AB8	M	184	191	Right-handed alpha

There are 23 sheets in PDB entry 6NB5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	80	85	anti-parallel
Strand 4	H	70	75	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	121	125	parallel
Strand 3	H	94	101	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	60	62	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	141	first strand
Strand 2	H	150	159	anti-parallel
Strand 3	H	190	198	anti-parallel
Strand 4	H	177	179	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	141	first strand
Strand 2	H	150	159	anti-parallel
Strand 3	H	190	198	anti-parallel
Strand 4	H	183	184	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	165	168	first strand
Strand 2	H	209	214	anti-parallel
Strand 3	H	219	224	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	72	77	anti-parallel
Strand 3	L	64	68	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	47	50	first strand
Strand 2	L	36	40	anti-parallel
Strand 3	L	87	92	anti-parallel
Strand 4	L	101	102	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	47	50	first strand
Strand 2	L	36	40	anti-parallel
Strand 3	L	87	92	anti-parallel
Strand 4	L	106	107	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	121	first strand
Strand 2	L	133	142	anti-parallel
Strand 3	L	175	183	anti-parallel
Strand 4	L	162	164	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	121	first strand
Strand 2	L	133	142	anti-parallel
Strand 3	L	175	183	anti-parallel
Strand 4	L	168	169	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	156	158	first strand
Strand 2	L	148	153	anti-parallel
Strand 3	L	194	200	anti-parallel
Strand 4	L	203	209	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	80	85	anti-parallel
Strand 4	I	70	75	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	121	125	parallel
Strand 3	I	94	101	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	46	51	anti-parallel
Strand 6	I	60	62	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	121	125	parallel
Strand 3	I	94	101	anti-parallel
Strand 4	I	114	117	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	134	141	first strand
Strand 2	I	150	159	anti-parallel
Strand 3	I	190	198	anti-parallel
Strand 4	I	177	179	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	134	141	first strand
Strand 2	I	150	159	anti-parallel
Strand 3	I	190	198	anti-parallel
Strand 4	I	183	184	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	165	168	first strand
Strand 2	I	209	214	anti-parallel
Strand 3	I	219	224	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	9	11	first strand
Strand 2	M	106	109	parallel
Strand 3	M	87	92	anti-parallel
Strand 4	M	36	40	anti-parallel
Strand 5	M	47	50	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	9	11	first strand
Strand 2	M	106	109	parallel
Strand 3	M	87	92	anti-parallel
Strand 4	M	101	102	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	18	23	first strand
Strand 2	M	72	77	anti-parallel
Strand 3	M	64	69	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	117	121	first strand
Strand 2	M	133	142	anti-parallel
Strand 3	M	175	183	anti-parallel
Strand 4	M	162	164	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	117	121	first strand
Strand 2	M	133	142	anti-parallel
Strand 3	M	175	183	anti-parallel
Strand 4	M	168	169	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	156	157	first strand
Strand 2	M	148	153	anti-parallel
Strand 3	M	194	200	anti-parallel
Strand 4	M	203	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NB5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NB5