Analysis of interatomic Contacts of Structural Units in PDB entry:
6NBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NBJ entry

There are 3 chains in PDB entry 6NBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 30LEU 407
B
 ARG 30LEU 407
C
 C 1 C 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 6NBJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
68 73Right-handed 310
Helix 2
AA2
A
81 102Right-handed alpha
Helix 3
AA3
A
118 137Right-handed alpha
Helix 4
AA4
A
145 152Right-handed alpha
Helix 5
AA5
A
153 158Right-handed alpha
Helix 6
AA6
A
197 211Right-handed alpha
Helix 7
AA7
A
215 226Right-handed alpha
Helix 8
AA8
A
257 271Right-handed alpha
Helix 9
AA9
A
273 279Right-handed 310
Helix 10
AB1
A
280 310Right-handed alpha
Helix 11
AB2
A
311 314Right-handed 310
Helix 12
AB3
A
324 328Right-handed 310
Helix 13
AB4
A
329 340Right-handed alpha
Helix 14
AB5
A
355 360Right-handed alpha
Helix 15
AB6
A
363 377Right-handed alpha
Helix 16
AB7
A
392 396Right-handed 310
Helix 17
AB8
B
81 102Right-handed alpha
Helix 18
AB9
B
103 105Right-handed 310
Helix 19
AC1
B
118 137Right-handed alpha
Helix 20
AC2
B
145 152Right-handed alpha
Helix 21
AC3
B
153 158Right-handed 310
Helix 22
AC4
B
197 209Right-handed alpha
Helix 23
AC5
B
215 227Right-handed alpha
Helix 24
AC6
B
242 247Right-handed 310
Helix 25
AC7
B
258 272Right-handed alpha
Helix 26
AC8
B
273 277Right-handed 310
Helix 27
AC9
B
283 310Right-handed alpha
Helix 28
AD1
B
310 315Right-handed alpha
Helix 29
AD2
B
324 328Right-handed 310
Helix 30
AD3
B
329 340Right-handed alpha
Helix 31
AD4
B
363 377Right-handed alpha
Helix 32
AD5
B
392 396Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 6NBJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 67first strand
Strand 2
A
45 52anti-parallel
Strand 3
A
33 39anti-parallel
Strand 4
A
107 115parallel
Strand 5
A
140 144parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 255first strand
Strand 2
A
186 193parallel
Strand 3
A
176 183anti-parallel
Strand 4
A
166 171anti-parallel
Strand 5
A
319 323parallel
Strand 6
A
350 352parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 381first strand
Strand 2
A
402 404anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 67first strand
Strand 2
B
45 52anti-parallel
Strand 3
B
33 39anti-parallel
Strand 4
B
107 115parallel
Strand 5
B
140 144parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 255first strand
Strand 2
B
186 193parallel
Strand 3
B
176 183anti-parallel
Strand 4
B
166 171anti-parallel
Strand 5
B
319 321parallel
Strand 6
B
350 352parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
379 381first strand
Strand 2
B
402 404anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il