Analysis of interatomic Contacts of Structural Units in PDB entry:
6NBL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NBL entry

There are 4 chains in PDB entry 6NBL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 10	VAL 414
B	ASN 10	VAL 414
C	SER 1	TRP 106
D	HIS 0	TRP 106

There are 49 helices in PDB entry 6NBL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	23	Right-handed 310
Helix 2	AA2	A	33	36	Right-handed 310
Helix 3	AA3	A	37	44	Right-handed alpha
Helix 4	AA4	A	45	47	Right-handed 310
Helix 5	AA5	A	67	77	Right-handed alpha
Helix 6	AA6	A	91	96	Right-handed alpha
Helix 7	AA7	A	104	120	Right-handed alpha
Helix 8	AA8	A	120	143	Right-handed alpha
Helix 9	AA9	A	150	154	Right-handed alpha
Helix 10	AB1	A	156	167	Right-handed alpha
Helix 11	AB2	A	170	172	Right-handed 310
Helix 12	AB3	A	173	186	Right-handed alpha
Helix 13	AB4	A	192	214	Right-handed alpha
Helix 14	AB5	A	218	225	Right-handed alpha
Helix 15	AB6	A	234	248	Right-handed alpha
Helix 16	AB7	A	249	266	Right-handed alpha
Helix 17	AB8	A	267	277	Right-handed alpha
Helix 18	AB9	A	280	292	Right-handed alpha
Helix 19	AC1	A	323	328	Right-handed alpha
Helix 20	AC2	A	359	378	Right-handed alpha
Helix 21	AC3	A	407	411	Right-handed 310
Helix 22	AC4	B	19	23	Right-handed 310
Helix 23	AC5	B	33	36	Right-handed 310
Helix 24	AC6	B	37	44	Right-handed alpha
Helix 25	AC7	B	45	47	Right-handed 310
Helix 26	AC8	B	57	61	Right-handed 310
Helix 27	AC9	B	67	77	Right-handed alpha
Helix 28	AD1	B	91	96	Right-handed alpha
Helix 29	AD2	B	104	120	Right-handed alpha
Helix 30	AD3	B	120	143	Right-handed alpha
Helix 31	AD4	B	150	154	Right-handed alpha
Helix 32	AD5	B	156	168	Right-handed alpha
Helix 33	AD6	B	170	172	Right-handed 310
Helix 34	AD7	B	173	185	Right-handed alpha
Helix 35	AD8	B	192	214	Right-handed alpha
Helix 36	AD9	B	218	226	Right-handed alpha
Helix 37	AE1	B	234	248	Right-handed alpha
Helix 38	AE2	B	249	267	Right-handed alpha
Helix 39	AE3	B	267	277	Right-handed alpha
Helix 40	AE4	B	280	292	Right-handed alpha
Helix 41	AE5	B	323	328	Right-handed alpha
Helix 42	AE6	B	359	376	Right-handed alpha
Helix 43	AE7	B	407	411	Right-handed 310
Helix 44	AE8	C	22	30	Right-handed alpha
Helix 45	AE9	C	64	72	Right-handed alpha
Helix 46	AF1	C	91	95	Right-handed 310
Helix 47	AF2	D	22	29	Right-handed alpha
Helix 48	AF3	D	64	72	Right-handed alpha
Helix 49	AF4	D	91	95	Right-handed 310

There are 12 sheets in PDB entry 6NBL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	62	65	anti-parallel
Strand 3	A	317	320	parallel
Strand 4	A	297	300	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	149	first strand
Strand 2	A	403	405	anti-parallel
Strand 3	A	382	383	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	228	first strand
Strand 2	A	231	232	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	307	first strand
Strand 2	A	310	312	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	392	first strand
Strand 2	A	398	399	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	62	65	anti-parallel
Strand 3	B	317	319	parallel
Strand 4	B	298	300	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	149	first strand
Strand 2	B	403	405	anti-parallel
Strand 3	B	382	383	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	228	first strand
Strand 2	B	231	232	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	307	first strand
Strand 2	B	310	312	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	392	first strand
Strand 2	B	398	399	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	16	first strand
Strand 2	C	2	6	anti-parallel
Strand 3	C	97	100	parallel
Strand 4	C	49	52	anti-parallel
Strand 5	C	82	84	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	17	first strand
Strand 2	D	1	6	anti-parallel
Strand 3	D	97	100	parallel
Strand 4	D	49	52	anti-parallel
Strand 5	D	82	84	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NBL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NBL