Analysis of interatomic Contacts of Structural Units in PDB entry:
6NBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NBM entry

There are 2 chains in PDB entry 6NBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 6LEU 428
B
 HIS 5LEU 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6NBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 9Right-handed 310
Helix 2
AA2
A
65 69Right-handed 310
Helix 3
AA3
A
71 80Right-handed alpha
Helix 4
AA4
A
80 87Right-handed alpha
Helix 5
AA5
A
93 106Right-handed alpha
Helix 6
AA6
A
114 134Right-handed alpha
Helix 7
AA7
A
136 142Right-handed alpha
Helix 8
AA8
A
160 163Right-handed 310
Helix 9
AA9
A
181 203Right-handed alpha
Helix 10
AB1
A
221 236Right-handed alpha
Helix 11
AB2
A
251 254Right-handed 310
Helix 12
AB3
A
264 267Right-handed 310
Helix 13
AB4
A
271 286Right-handed alpha
Helix 14
AB5
A
299 311Right-handed alpha
Helix 15
AB6
A
325 336Right-handed alpha
Helix 16
AB7
A
344 349Right-handed alpha
Helix 17
AB8
A
350 363Right-handed alpha
Helix 18
AB9
A
380 390Right-handed alpha
Helix 19
AC1
A
401 419Right-handed alpha
Helix 20
AC2
A
423 428Right-handed 310
Helix 21
AC3
B
5 9Right-handed 310
Helix 22
AC4
B
65 69Right-handed 310
Helix 23
AC5
B
71 80Right-handed alpha
Helix 24
AC6
B
80 87Right-handed alpha
Helix 25
AC7
B
93 106Right-handed alpha
Helix 26
AC8
B
114 134Right-handed alpha
Helix 27
AC9
B
136 142Right-handed alpha
Helix 28
AD1
B
160 163Right-handed 310
Helix 29
AD2
B
181 203Right-handed alpha
Helix 30
AD3
B
221 236Right-handed alpha
Helix 31
AD4
B
251 254Right-handed 310
Helix 32
AD5
B
264 267Right-handed 310
Helix 33
AD6
B
271 286Right-handed alpha
Helix 34
AD7
B
299 311Right-handed alpha
Helix 35
AD8
B
325 336Right-handed alpha
Helix 36
AD9
B
344 349Right-handed alpha
Helix 37
AE1
B
350 364Right-handed alpha
Helix 38
AE2
B
380 390Right-handed alpha
Helix 39
AE3
B
401 419Right-handed alpha
Helix 40
AE4
B
423 428Right-handed 310
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There are 6 sheets in PDB entry 6NBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 20first strand
Strand 2
A
26 34anti-parallel
Strand 3
A
39 43anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
393 395parallel
Strand 3
A
367 371parallel
Strand 4
A
340 343parallel
Strand 5
A
315 318parallel
Strand 6
A
288 292parallel
Strand 7
A
245 249parallel
Strand 8
A
171 175anti-parallel
Strand 9
A
154 158anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 257first strand
Strand 2
A
260 263anti-parallel
Strand 3
A
268 270anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 20first strand
Strand 2
B
26 34anti-parallel
Strand 3
B
39 43anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 152first strand
Strand 2
B
393 395parallel
Strand 3
B
367 371parallel
Strand 4
B
340 343parallel
Strand 5
B
315 318parallel
Strand 6
B
288 292parallel
Strand 7
B
245 249parallel
Strand 8
B
171 175anti-parallel
Strand 9
B
154 158anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 257first strand
Strand 2
B
260 263anti-parallel
Strand 3
B
268 270anti-parallel
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