Analysis of interatomic Contacts of Structural Units in PDB entry:
6NBO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NBO entry

There is 1 chain in PDB entry 6NBO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6NBO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
81 90Right-handed alpha
Helix 2
AA2
A
95 110Right-handed alpha
Helix 3
AA3
A
127 140Right-handed alpha
Helix 4
AA4
A
161 173Right-handed alpha
Helix 5
AA5
A
188 204Right-handed alpha
Helix 6
AA6
A
214 232Right-handed alpha
Helix 7
AA7
A
244 249Right-handed alpha
Helix 8
AA8
A
250 265Right-handed alpha
Helix 9
AA9
A
280 288Right-handed alpha
Helix 10
AB1
A
309 321Right-handed alpha
Helix 11
AB2
A
325 335Right-handed alpha
Helix 12
AB3
A
337 345Right-handed alpha
Helix 13
AB4
A
366 374Right-handed alpha
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There are 3 sheets in PDB entry 6NBO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 30first strand
Strand 2
A
17 22anti-parallel
Strand 3
A
3 9anti-parallel
Strand 4
A
40 43parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
359 362anti-parallel
Strand 3
A
379 382anti-parallel
Strand 4
A
385 389anti-parallel
Strand 5
A
392 393anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 58first strand
Strand 2
A
112 120parallel
Strand 3
A
145 151parallel
Strand 4
A
176 180parallel
Strand 5
A
207 211parallel
Strand 6
A
238 242parallel
Strand 7
A
267 270parallel
Strand 8
A
291 293parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il