Analysis of interatomic Contacts of Structural Units in PDB entry:
6NBP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NBP entry

There is 1 chain in PDB entry 6NBP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 13PHE 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6NBP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 39Right-handed alpha
Helix 2
AA2
A
58 65Right-handed alpha
Helix 3
AA3
A
74 85Right-handed alpha
Helix 4
AA4
A
98 103Right-handed alpha
Helix 5
AA5
A
122 131Right-handed alpha
Helix 6
AA6
A
163 188Right-handed alpha
Helix 7
AA7
A
204 213Right-handed alpha
Helix 8
AA8
A
221 233Right-handed alpha
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There are 3 sheets in PDB entry 6NBP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
47 52parallel
Strand 3
A
19 24parallel
Strand 4
A
87 91parallel
Strand 5
A
107 111parallel
Strand 6
A
134 140anti-parallel
Strand 7
A
150 156anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
202 203parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 243first strand
Strand 2
A
249 252anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il