Analysis of interatomic Contacts of Structural Units in PDB entry:
6NBQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NBQ entry

There are 16 chains in PDB entry 6NBQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	LYS 3	ARG 394
J	PRO 8	TYR 168
K	PRO 7	MET 218
I	GLN 6	ASN 189
N	GLY 2	ALA 149
L	GLY 11	SER 76
M	MET 1	SER 111
O	ALA 2	GLN 70
S	MET 43	VAL 99
A	UNK 4	LEU 362
C	GLY 18	TRP 131
E	MET 1	TRP 101
P	ALA 2	HIS 43
F	TYR 7	GLN 655
D	SER 2	THR 505
B	ASN 11	PRO 387

There are164 helices in PDB entry 6NBQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	50	55	Right-handed alpha
Helix 2	AA2	H	56	58	Right-handed 310
Helix 3	AA3	H	59	68	Right-handed alpha
Helix 4	AA4	H	75	88	Right-handed alpha
Helix 5	AA5	H	95	125	Right-handed alpha
Helix 6	AA6	H	128	132	Right-handed 310
Helix 7	AA7	H	133	149	Right-handed alpha
Helix 8	AA8	H	172	195	Right-handed alpha
Helix 9	AA9	H	200	205	Right-handed alpha
Helix 10	AB1	H	211	219	Right-handed alpha
Helix 11	AB2	H	225	229	Right-handed 310
Helix 12	AB3	H	233	238	Right-handed alpha
Helix 13	AB4	H	257	282	Right-handed alpha
Helix 14	AB5	H	287	298	Right-handed alpha
Helix 15	AB6	H	357	364	Right-handed alpha
Helix 16	AB7	H	365	370	Right-handed alpha
Helix 17	AB8	H	376	386	Right-handed alpha
Helix 18	AB9	J	13	22	Right-handed alpha
Helix 19	AC1	J	45	57	Right-handed alpha
Helix 20	AC2	J	114	117	Right-handed 310
Helix 21	AC3	J	118	127	Right-handed alpha
Helix 22	AC4	K	25	41	Right-handed alpha
Helix 23	AC5	K	52	59	Right-handed alpha
Helix 24	AC6	K	94	104	Right-handed alpha
Helix 25	AC7	K	115	120	Right-handed alpha
Helix 26	AC8	K	121	125	Right-handed 310
Helix 27	AC9	K	134	138	Right-handed 310
Helix 28	AD1	K	151	167	Right-handed alpha
Helix 29	AD2	K	170	178	Right-handed 310
Helix 30	AD3	I	7	12	Right-handed alpha
Helix 31	AD4	I	14	32	Right-handed alpha
Helix 32	AD5	I	67	73	Right-handed alpha
Helix 33	AD6	I	107	112	Right-handed alpha
Helix 34	AD7	I	131	133	Right-handed 310
Helix 35	AD8	I	137	142	Right-handed alpha
Helix 36	AD9	N	7	16	Right-handed alpha
Helix 37	AE1	N	32	37	Right-handed alpha
Helix 38	AE2	N	54	59	Right-handed alpha
Helix 39	AE3	N	82	87	Right-handed alpha
Helix 40	AE4	N	104	108	Right-handed 310
Helix 41	AE5	N	109	123	Right-handed alpha
Helix 42	AE6	N	142	147	Right-handed alpha
Helix 43	AE7	L	17	22	Right-handed alpha
Helix 44	AE8	L	22	35	Right-handed alpha
Helix 45	AE9	L	40	54	Right-handed alpha
Helix 46	AF1	L	54	59	Right-handed alpha
Helix 47	AF2	M	42	60	Right-handed alpha
Helix 48	AF3	M	66	87	Right-handed alpha
Helix 49	AF4	O	12	17	Right-handed alpha
Helix 50	AF5	O	20	25	Right-handed alpha
Helix 51	AF6	O	30	34	Right-handed 310
Helix 52	AF7	A	13	22	Right-handed alpha
Helix 53	AF8	A	31	59	Right-handed alpha
Helix 54	AF9	A	74	86	Right-handed alpha
Helix 55	AG1	A	96	108	Right-handed alpha
Helix 56	AG2	A	108	113	Right-handed alpha
Helix 57	AG3	A	133	139	Right-handed alpha
Helix 58	AG4	A	141	153	Right-handed alpha
Helix 59	AG5	A	155	172	Right-handed alpha
Helix 60	AG6	A	172	187	Right-handed alpha
Helix 61	AG7	A	191	199	Right-handed alpha
Helix 62	AG8	A	212	228	Right-handed alpha
Helix 63	AG9	A	251	276	Right-handed alpha
Helix 64	AH1	A	299	304	Right-handed alpha
Helix 65	AH2	A	304	310	Right-handed alpha
Helix 66	AH3	A	313	330	Right-handed alpha
Helix 67	AH4	A	336	341	Right-handed alpha
Helix 68	AH5	A	347	360	Right-handed alpha
Helix 69	AH6	C	19	30	Right-handed alpha
Helix 70	AH7	C	31	43	Right-handed alpha
Helix 71	AH8	C	73	97	Right-handed alpha
Helix 72	AH9	C	103	126	Right-handed alpha
Helix 73	AI1	E	2	23	Right-handed alpha
Helix 74	AI2	E	26	52	Right-handed alpha
Helix 75	AI3	E	58	88	Right-handed alpha
Helix 76	AI4	E	92	96	Right-handed 310
Helix 77	AI5	P	6	25	Right-handed alpha
Helix 78	AI6	F	9	29	Right-handed alpha
Helix 79	AI7	F	29	34	Right-handed alpha
Helix 80	AI8	F	36	54	Right-handed alpha
Helix 81	AI9	F	55	61	Right-handed alpha
Helix 82	AJ1	F	90	115	Right-handed alpha
Helix 83	AJ2	F	120	139	Right-handed alpha
Helix 84	AJ3	F	149	163	Right-handed alpha
Helix 85	AJ4	F	168	200	Right-handed alpha
Helix 86	AJ5	F	204	212	Right-handed alpha
Helix 87	AJ6	F	213	216	Right-handed 310
Helix 88	AJ7	F	224	240	Right-handed alpha
Helix 89	AJ8	F	249	255	Right-handed 310
Helix 90	AJ9	F	259	264	Right-handed alpha
Helix 91	AK1	F	272	280	Right-handed alpha
Helix 92	AK2	F	280	285	Right-handed alpha
Helix 93	AK3	F	287	292	Right-handed alpha
Helix 94	AK4	F	292	308	Right-handed alpha
Helix 95	AK5	F	316	336	Right-handed alpha
Helix 96	AK6	F	339	348	Right-handed alpha
Helix 97	AK7	F	353	366	Right-handed alpha
Helix 98	AK8	F	392	395	Right-handed 310
Helix 99	AK9	F	396	404	Right-handed alpha
Helix 100	AL1	F	418	425	Right-handed alpha
Helix 101	AL2	F	432	455	Right-handed alpha
Helix 102	AL3	F	486	493	Right-handed alpha
Helix 103	AL4	F	495	500	Right-handed alpha
Helix 104	AL5	F	509	514	Right-handed alpha
Helix 105	AL6	F	587	602	Right-handed alpha
Helix 106	AL7	F	609	625	Right-handed alpha
Helix 107	AL8	F	626	631	Right-handed 310
Helix 108	AL9	F	634	655	Right-handed alpha
Helix 109	AM1	D	5	18	Right-handed alpha
Helix 110	AM2	D	19	24	Right-handed 310
Helix 111	AM3	D	32	55	Right-handed alpha
Helix 112	AM4	D	88	105	Right-handed alpha
Helix 113	AM5	D	112	133	Right-handed alpha
Helix 114	AM6	D	138	144	Right-handed alpha
Helix 115	AM7	D	147	157	Right-handed alpha
Helix 116	AM8	D	161	189	Right-handed alpha
Helix 117	AM9	D	199	204	Right-handed alpha
Helix 118	AN1	D	207	226	Right-handed alpha
Helix 119	AN2	D	233	241	Right-handed alpha
Helix 120	AN3	D	243	251	Right-handed alpha
Helix 121	AN4	D	253	266	Right-handed alpha
Helix 122	AN5	D	270	277	Right-handed alpha
Helix 123	AN6	D	278	298	Right-handed alpha
Helix 124	AN7	D	301	322	Right-handed alpha
Helix 125	AN8	D	325	358	Right-handed alpha
Helix 126	AN9	D	367	372	Right-handed alpha
Helix 127	AO1	D	373	387	Right-handed alpha
Helix 128	AO2	D	392	406	Right-handed alpha
Helix 129	AO3	D	412	424	Right-handed alpha
Helix 130	AO4	D	424	440	Right-handed alpha
Helix 131	AO5	D	460	480	Right-handed alpha
Helix 132	AO6	D	481	501	Right-handed alpha
Helix 133	AO7	B	15	35	Right-handed alpha
Helix 134	AO8	B	38	41	Right-handed 310
Helix 135	AO9	B	42	56	Right-handed alpha
Helix 136	AP1	B	77	102	Right-handed alpha
Helix 137	AP2	B	108	128	Right-handed alpha
Helix 138	AP3	B	131	151	Right-handed alpha
Helix 139	AP4	B	158	188	Right-handed alpha
Helix 140	AP5	B	193	201	Right-handed alpha
Helix 141	AP6	B	205	214	Right-handed alpha
Helix 142	AP7	B	214	223	Right-handed alpha
Helix 143	AP8	B	230	237	Right-handed alpha
Helix 144	AP9	B	240	248	Right-handed alpha
Helix 145	AQ1	B	249	264	Right-handed alpha
Helix 146	AQ2	B	273	284	Right-handed alpha
Helix 147	AQ3	B	284	293	Right-handed alpha
Helix 148	AQ4	B	298	315	Right-handed alpha
Helix 149	AQ5	B	315	321	Right-handed alpha
Helix 150	AQ6	B	324	341	Right-handed alpha
Helix 151	AQ7	B	342	354	Right-handed alpha
Helix 152	AQ8	B	369	385	Right-handed alpha
Helix 153	AQ9	B	389	405	Right-handed alpha
Helix 154	AR1	B	407	434	Right-handed alpha
Helix 155	AR2	B	456	473	Right-handed alpha
Helix 156	AR3	B	479	487	Right-handed alpha
Helix 157	AR4	B	488	492	Right-handed 310
Helix 158	AR5	G	5	10	Right-handed alpha
Helix 159	AR6	G	11	29	Right-handed alpha
Helix 160	AR7	G	31	50	Right-handed alpha
Helix 161	AR8	G	55	66	Right-handed alpha
Helix 162	AR9	G	69	79	Right-handed alpha
Helix 163	AS1	G	100	118	Right-handed alpha
Helix 164	AS2	G	143	166	Right-handed alpha

There are 21 sheets in PDB entry 6NBQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	14	first strand
Strand 2	H	27	33	anti-parallel
Strand 3	H	36	43	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	160	first strand
Strand 2	H	163	164	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	325	332	first strand
Strand 2	H	337	344	anti-parallel
Strand 3	H	350	356	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	27	31	first strand
Strand 2	J	37	40	anti-parallel
Strand 3	J	93	100	parallel
Strand 4	J	75	82	anti-parallel
Strand 5	J	60	68	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	106	108	first strand
Strand 2	J	131	133	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	9	10	first strand
Strand 2	M	107	108	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	84	86	first strand
Strand 2	K	111	113	parallel
Strand 3	K	141	143	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	183	187	first strand
Strand 2	M	28	33	anti-parallel
Strand 3	M	10	13	anti-parallel
Strand 4	M	4	6	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	191	192	first strand
Strand 2	M	64	65	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	57	first strand
Strand 2	I	119	120	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	79	82	first strand
Strand 2	I	93	99	anti-parallel
Strand 3	I	135	136	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	18	20	first strand
Strand 2	N	126	130	parallel
Strand 3	N	98	102	parallel
Strand 4	N	43	45	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	63	65	first strand
Strand 2	N	78	80	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	15	18	first strand
Strand 2	M	21	24	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	39	40	first strand
Strand 2	M	91	92	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	59	62	first strand
Strand 2	O	47	51	anti-parallel
Strand 3	O	38	44	anti-parallel
Strand 4	O	8	11	anti-parallel
Strand 5	O	66	68	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	87	90	first strand
Strand 2	S	75	78	anti-parallel
Strand 3	S	64	68	anti-parallel
Strand 4	S	50	53	anti-parallel
Strand 5	S	95	97	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	70	71	first strand
Strand 2	F	87	88	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	78	first strand
Strand 2	F	81	84	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	69	first strand
Strand 2	D	81	82	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	74	75	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NBQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NBQ