Analysis of interatomic Contacts of Structural Units in PDB entry:
6NBT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NBT entry

There are 2 chains in PDB entry 6NBT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 2LYS 214
B
 ALA 0LYS 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6NBT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 64Right-handed alpha
Helix 2
AA2
A
76 84Right-handed alpha
Helix 3
AA3
A
104 114Right-handed alpha
Helix 4
AA4
A
158 160Right-handed 310
Helix 5
AA5
A
161 178Right-handed alpha
Helix 6
AA6
B
47 64Right-handed alpha
Helix 7
AA7
B
76 83Right-handed alpha
Helix 8
AA8
B
104 114Right-handed alpha
Helix 9
AA9
B
158 160Right-handed 310
Helix 10
AB1
B
161 178Right-handed alpha
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There are 6 sheets in PDB entry 6NBT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
101 103anti-parallel
Strand 3
A
147 155anti-parallel
Strand 4
A
96 98anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
101 103anti-parallel
Strand 3
A
147 155anti-parallel
Strand 4
A
4 13anti-parallel
Strand 5
A
192 203anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
139 142anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 46first strand
Strand 2
B
101 103anti-parallel
Strand 3
B
147 155anti-parallel
Strand 4
B
96 98anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 46first strand
Strand 2
B
101 103anti-parallel
Strand 3
B
147 155anti-parallel
Strand 4
B
4 13anti-parallel
Strand 5
B
192 203anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 122first strand
Strand 2
B
139 142anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il