Analysis of interatomic Contacts of Structural Units in PDB entry:
6NBW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NBW entry

There are 4 chains in PDB entry 6NBW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2GLU 72
A
 GLY 74PHE 375
N
 HIS 76ILE 308
P
 GLY 2TYR 139
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6NBW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 61Right-handed alpha
Helix 2
AA2
A
78 92Right-handed alpha
Helix 3
AA3
A
97 101Right-handed 310
Helix 4
AA4
A
112 126Right-handed alpha
Helix 5
AA5
A
137 145Right-handed alpha
Helix 6
AA6
A
172 175Right-handed 310
Helix 7
AA7
A
181 195Right-handed alpha
Helix 8
AA8
A
202 217Right-handed alpha
Helix 9
AA9
A
222 233Right-handed alpha
Helix 10
AB1
A
252 260Right-handed alpha
Helix 11
AB2
A
261 262Right-handed 310
Helix 12
AB3
A
263 268Right-handed 310
Helix 13
AB4
A
273 284Right-handed alpha
Helix 14
AB5
A
285 288Right-handed 310
Helix 15
AB6
A
289 296Right-handed alpha
Helix 16
AB7
A
301 306Right-handed 310
Helix 17
AB8
A
308 321Right-handed alpha
Helix 18
AB9
A
334 336Right-handed 310
Helix 19
AC1
A
337 347Right-handed alpha
Helix 20
AC2
A
348 350Right-handed 310
Helix 21
AC3
A
351 356Right-handed alpha
Helix 22
AC4
A
359 366Right-handed alpha
Helix 23
AC5
A
368 374Right-handed alpha
Helix 24
AC6
N
88 92Right-handed 310
Helix 25
AC7
N
93 105Right-handed alpha
Helix 26
AC8
N
108 118Right-handed alpha
Helix 27
AC9
N
167 170Right-handed 310
Helix 28
AD1
N
173 189Right-handed alpha
Helix 29
AD2
N
201 208Right-handed alpha
Helix 30
AD3
P
3 12Right-handed alpha
Helix 31
AD4
P
38 42Right-handed 310
Helix 32
AD5
P
43 51Right-handed alpha
Helix 33
AD6
P
56 62Right-handed alpha
Helix 34
AD7
P
119 137Right-handed alpha
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There are 8 sheets in PDB entry 6NBW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
8 12anti-parallel
Strand 4
A
103 107parallel
Strand 5
A
131 136parallel
Strand 6
A
357 358anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
35 38anti-parallel
Strand 3
A
65 68anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
75 76anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
160 166anti-parallel
Strand 3
A
176 178anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
160 166anti-parallel
Strand 3
A
150 155anti-parallel
Strand 4
A
297 300parallel
Strand 5
A
329 330parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
247 250anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
83 86first strand
Strand 2
N
125 131anti-parallel
Strand 3
N
141 151anti-parallel
Strand 4
N
154 165anti-parallel
Strand 5
N
193 198parallel
Strand 6
N
302 307anti-parallel
Strand 7
N
211 212anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
29 33first strand
Strand 2
P
16 23anti-parallel
Strand 3
P
108 114anti-parallel
Strand 4
P
99 104anti-parallel
Strand 5
P
84 89anti-parallel
Strand 6
P
68 75anti-parallel
Strand 7
P
63 65anti-parallel
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