Analysis of interatomic Contacts of Structural Units in PDB entry:
6NBX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NBX entry

There are 6 chains in PDB entry 6NBX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 28	LEU 362
B	ASN 11	PRO 493
C	VAL 13	TRP 131
D	SER 2	THR 505
E	MET 1	TRP 101
F	MET 1	ALA 430

There are171 helices in PDB entry 6NBX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	41	Right-handed alpha
Helix 2	AA2	A	42	59	Right-handed alpha
Helix 3	AA3	A	74	85	Right-handed alpha
Helix 4	AA4	A	96	101	Right-handed alpha
Helix 5	AA5	A	102	107	Right-handed alpha
Helix 6	AA6	A	107	113	Right-handed alpha
Helix 7	AA7	A	114	116	Right-handed 310
Helix 8	AA8	A	131	139	Right-handed alpha
Helix 9	AA9	A	141	146	Right-handed alpha
Helix 10	AB1	A	146	151	Right-handed alpha
Helix 11	AB2	A	155	170	Right-handed alpha
Helix 12	AB3	A	173	188	Right-handed alpha
Helix 13	AB4	A	191	197	Right-handed alpha
Helix 14	AB5	A	207	212	Right-handed alpha
Helix 15	AB6	A	215	228	Right-handed alpha
Helix 16	AB7	A	251	259	Right-handed alpha
Helix 17	AB8	A	261	276	Right-handed alpha
Helix 18	AB9	A	299	308	Right-handed alpha
Helix 19	AC1	A	313	328	Right-handed alpha
Helix 20	AC2	A	336	345	Right-handed alpha
Helix 21	AC3	A	347	360	Right-handed alpha
Helix 22	AC4	B	20	35	Right-handed alpha
Helix 23	AC5	B	38	41	Right-handed 310
Helix 24	AC6	B	42	57	Right-handed alpha
Helix 25	AC7	B	58	63	Right-handed alpha
Helix 26	AC8	B	70	73	Right-handed 310
Helix 27	AC9	B	77	106	Right-handed alpha
Helix 28	AD1	B	109	125	Right-handed alpha
Helix 29	AD2	B	131	151	Right-handed alpha
Helix 30	AD3	B	158	188	Right-handed alpha
Helix 31	AD4	B	193	199	Right-handed alpha
Helix 32	AD5	B	205	214	Right-handed alpha
Helix 33	AD6	B	215	223	Right-handed alpha
Helix 34	AD7	B	231	236	Right-handed alpha
Helix 35	AD8	B	240	248	Right-handed alpha
Helix 36	AD9	B	249	264	Right-handed alpha
Helix 37	AE1	B	273	291	Right-handed alpha
Helix 38	AE2	B	298	321	Right-handed alpha
Helix 39	AE3	B	322	354	Right-handed alpha
Helix 40	AE4	B	369	385	Right-handed alpha
Helix 41	AE5	B	389	403	Right-handed alpha
Helix 42	AE6	B	409	434	Right-handed alpha
Helix 43	AE7	B	456	473	Right-handed alpha
Helix 44	AE8	B	477	487	Right-handed alpha
Helix 45	AE9	C	19	40	Right-handed alpha
Helix 46	AF1	C	73	97	Right-handed alpha
Helix 47	AF2	C	103	126	Right-handed alpha
Helix 48	AF3	D	6	19	Right-handed alpha
Helix 49	AF4	D	32	57	Right-handed alpha
Helix 50	AF5	D	88	105	Right-handed alpha
Helix 51	AF6	D	112	133	Right-handed alpha
Helix 52	AF7	D	138	144	Right-handed alpha
Helix 53	AF8	D	147	157	Right-handed alpha
Helix 54	AF9	D	162	189	Right-handed alpha
Helix 55	AG1	D	199	204	Right-handed alpha
Helix 56	AG2	D	207	224	Right-handed alpha
Helix 57	AG3	D	234	239	Right-handed alpha
Helix 58	AG4	D	243	251	Right-handed alpha
Helix 59	AG5	D	253	267	Right-handed alpha
Helix 60	AG6	D	270	278	Right-handed alpha
Helix 61	AG7	D	278	298	Right-handed alpha
Helix 62	AG8	D	301	322	Right-handed alpha
Helix 63	AG9	D	325	358	Right-handed alpha
Helix 64	AH1	D	367	372	Right-handed alpha
Helix 65	AH2	D	373	384	Right-handed alpha
Helix 66	AH3	D	385	388	Right-handed 310
Helix 67	AH4	D	392	406	Right-handed alpha
Helix 68	AH5	D	412	424	Right-handed alpha
Helix 69	AH6	D	424	440	Right-handed alpha
Helix 70	AH7	D	462	479	Right-handed alpha
Helix 71	AH8	D	480	484	Right-handed 310
Helix 72	AH9	D	488	501	Right-handed alpha
Helix 73	AI1	E	2	24	Right-handed alpha
Helix 74	AI2	E	28	51	Right-handed alpha
Helix 75	AI3	E	58	88	Right-handed alpha
Helix 76	AI4	F	2	6	Right-handed alpha
Helix 77	AI5	F	9	27	Right-handed alpha
Helix 78	AI6	F	29	34	Right-handed alpha
Helix 79	AI7	F	36	64	Right-handed alpha
Helix 80	AI8	F	90	115	Right-handed alpha
Helix 81	AI9	F	120	140	Right-handed alpha
Helix 82	AJ1	F	145	150	Right-handed alpha
Helix 83	AJ2	F	150	163	Right-handed alpha
Helix 84	AJ3	F	168	200	Right-handed alpha
Helix 85	AJ4	F	205	219	Right-handed alpha
Helix 86	AJ5	F	226	235	Right-handed alpha
Helix 87	AJ6	F	236	241	Right-handed alpha
Helix 88	AJ7	F	249	254	Right-handed alpha
Helix 89	AJ8	F	257	264	Right-handed alpha
Helix 90	AJ9	F	271	280	Right-handed alpha
Helix 91	AK1	F	280	285	Right-handed alpha
Helix 92	AK2	F	287	310	Right-handed alpha
Helix 93	AK3	F	314	332	Right-handed alpha
Helix 94	AK4	F	339	368	Right-handed alpha
Helix 95	AK5	F	387	391	Right-handed 310
Helix 96	AK6	F	396	404	Right-handed alpha
Helix 97	AK7	F	418	423	Right-handed alpha
Helix 98	AK8	F	433	454	Right-handed alpha
Helix 99	AK9	F	469	474	Right-handed alpha
Helix 100	AL1	F	483	487	Right-handed 310
Helix 101	AL2	F	488	493	Right-handed alpha
Helix 102	AL3	F	494	500	Right-handed alpha
Helix 103	AL4	F	507	516	Right-handed alpha
Helix 104	AL5	F	531	539	Right-handed alpha
Helix 105	AL6	F	539	553	Right-handed alpha
Helix 106	AL7	F	569	578	Right-handed alpha
Helix 107	AL8	F	579	581	Right-handed 310
Helix 108	AL9	F	582	589	Right-handed alpha
Helix 109	AM1	F	589	598	Right-handed alpha
Helix 110	AM2	F	598	608	Right-handed alpha
Helix 111	AM3	F	608	617	Right-handed alpha
Helix 112	AM4	F	620	628	Right-handed alpha
Helix 113	AM5	F	634	653	Right-handed alpha
Helix 114	AM6	G	5	24	Right-handed alpha
Helix 115	AM7	G	24	29	Right-handed alpha
Helix 116	AM8	G	31	53	Right-handed alpha
Helix 117	AM9	G	55	66	Right-handed alpha
Helix 118	AN1	G	69	80	Right-handed alpha
Helix 119	AN2	G	99	118	Right-handed alpha
Helix 120	AN3	G	144	164	Right-handed alpha
Helix 121	AN4	H	50	55	Right-handed alpha
Helix 122	AN5	H	56	58	Right-handed 310
Helix 123	AN6	H	63	68	Right-handed alpha
Helix 124	AN7	H	76	84	Right-handed alpha
Helix 125	AN8	H	95	125	Right-handed alpha
Helix 126	AN9	H	128	130	Right-handed 310
Helix 127	AO1	H	131	149	Right-handed alpha
Helix 128	AO2	H	172	180	Right-handed alpha
Helix 129	AO3	H	183	195	Right-handed alpha
Helix 130	AO4	H	199	203	Right-handed 310
Helix 131	AO5	H	211	218	Right-handed alpha
Helix 132	AO6	H	221	229	Right-handed 310
Helix 133	AO7	H	233	238	Right-handed alpha
Helix 134	AO8	H	257	282	Right-handed alpha
Helix 135	AO9	H	287	298	Right-handed alpha
Helix 136	AP1	H	365	370	Right-handed alpha
Helix 137	AP2	H	378	383	Right-handed alpha
Helix 138	AP3	H	384	386	Right-handed 310
Helix 139	AP4	I	14	19	Right-handed alpha
Helix 140	AP5	I	21	29	Right-handed alpha
Helix 141	AP6	I	30	32	Right-handed 310
Helix 142	AP7	I	67	72	Right-handed alpha
Helix 143	AP8	I	130	133	Right-handed 310
Helix 144	AP9	J	15	21	Right-handed alpha
Helix 145	AQ1	J	45	57	Right-handed alpha
Helix 146	AQ2	J	114	117	Right-handed 310
Helix 147	AQ3	J	118	128	Right-handed alpha
Helix 148	AQ4	K	25	41	Right-handed alpha
Helix 149	AQ5	K	54	62	Right-handed alpha
Helix 150	AQ6	K	95	104	Right-handed alpha
Helix 151	AQ7	K	134	138	Right-handed 310
Helix 152	AQ8	K	151	167	Right-handed alpha
Helix 153	AQ9	K	170	174	Right-handed 310
Helix 154	AR1	L	16	22	Right-handed alpha
Helix 155	AR2	L	22	35	Right-handed alpha
Helix 156	AR3	L	42	52	Right-handed alpha
Helix 157	AR4	L	54	59	Right-handed alpha
Helix 158	AR5	M	44	49	Right-handed alpha
Helix 159	AR6	M	49	60	Right-handed alpha
Helix 160	AR7	M	66	78	Right-handed alpha
Helix 161	AR8	M	80	86	Right-handed alpha
Helix 162	AR9	N	7	17	Right-handed alpha
Helix 163	AS1	N	32	40	Right-handed alpha
Helix 164	AS2	N	54	60	Right-handed alpha
Helix 165	AS3	N	82	91	Right-handed alpha
Helix 166	AS4	N	104	108	Right-handed 310
Helix 167	AS5	N	109	118	Right-handed alpha
Helix 168	AS6	N	143	148	Right-handed alpha
Helix 169	AS7	P	6	11	Right-handed alpha
Helix 170	AS8	P	13	25	Right-handed alpha
Helix 171	AS9	Q	17	43	Right-handed alpha

There are 24 sheets in PDB entry 6NBX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	74	75	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	69	first strand
Strand 2	H	5	7	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	73	first strand
Strand 2	D	78	82	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	71	first strand
Strand 2	F	87	89	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	77	first strand
Strand 2	F	82	84	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	14	first strand
Strand 2	H	28	33	anti-parallel
Strand 3	H	36	42	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	160	first strand
Strand 2	H	163	164	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	325	326	first strand
Strand 2	H	337	344	anti-parallel
Strand 3	H	329	332	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	325	326	first strand
Strand 2	H	337	344	anti-parallel
Strand 3	H	350	356	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	57	first strand
Strand 2	I	119	120	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	79	83	first strand
Strand 2	I	92	99	anti-parallel
Strand 3	I	135	136	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	27	31	first strand
Strand 2	J	37	41	anti-parallel
Strand 3	J	93	100	parallel
Strand 4	J	75	82	anti-parallel
Strand 5	J	60	68	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	106	108	first strand
Strand 2	J	131	133	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	9	10	first strand
Strand 2	M	107	108	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	45	46	first strand
Strand 2	K	83	87	parallel
Strand 3	K	111	114	parallel
Strand 4	K	141	143	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	183	187	first strand
Strand 2	M	28	32	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	191	192	first strand
Strand 2	M	64	65	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	6	first strand
Strand 2	M	11	13	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	15	18	first strand
Strand 2	M	21	24	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	39	40	first strand
Strand 2	M	91	92	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	43	44	first strand
Strand 2	N	98	100	parallel
Strand 3	N	126	134	parallel
Strand 4	N	18	23	parallel
Strand 5	N	139	142	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	63	65	first strand
Strand 2	N	78	80	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	59	62	first strand
Strand 2	O	47	51	anti-parallel
Strand 3	O	38	44	anti-parallel
Strand 4	O	8	11	anti-parallel
Strand 5	O	66	68	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	87	90	first strand
Strand 2	S	75	78	anti-parallel
Strand 3	S	64	68	anti-parallel
Strand 4	S	50	53	anti-parallel
Strand 5	S	95	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NBX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NBX